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Bioconductor Changlog.
Tue, 18 Nov 2008
topGO
Bug solved in GenTable() function: mismatch between GO ids and term Description
The weight and elim algorithms have been optimize. The weight algorithm runs almost twice as fast now.
New function added: nodesInInducedGraph() - similar with inducedGraph() but it just returns the nodes in the graph as a characher vector and not a graph object.
New feature added: When building the topGOdata object, the user can prune the GO graph such that the leafs in the graph have at least a number of annotated genes. By adding "nodeSize = k" in the constructor of the topGOdata object, only GO terms with more than k annotated genes will be used. By default, nodeSize = 0.