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Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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Fixed code/document inconsistency in man page.

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Changed biocViews DNACopyNumber to CopyNumberVariants and SNPsAndGeneticVariability to SNP, GeneticVariability.

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Made the summarizeByRegion/cgma function more robust

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fixed Rdversion 2 parser warnings

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