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Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled.

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Fixed man page macro usage.

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