About
Click here to learn more about this blog.

Packages
Click on a link
for updates to that package only.

Subscribe
Subscribe to the Bioconductor Changlog.

puma
changed SET_STRING_ELT back to SET_VECTOR_ELT in pumaclust_c.c

[/puma] permanent link

puma
in the first place - and now generate warnings

[/puma] permanent link

puma
Added affydata to the Suggests field.

[/puma] permanent link

puma
Bumped version number
Addition of local_n variable in donlp2.c to overcome a problem with gcc 4.1.2. Many thanks to Antti Honkela for this fix.

[/puma] permanent link

puma
Removed support for soon to be defunct class exprSet.

[/puma] permanent link

puma
Modified all examples to use Dilution data rather than affybatch.example
Added a new data file, eset_mmgmos, created by applying mmgmos to Dilution
Moved some packages from Depends to Suggests
Minor change to createContrastMatrix to deal with uninformative factors

[/puma] permanent link

puma
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

[/puma] permanent link

puma
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

[/puma] permanent link

puma
Updated dependencies to kill warnings.

[/puma] permanent link

puma
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.

[/puma] permanent link

puma
Update to version 1.5.3
- changes to pumaComb and create_eset_r to fix bug when using multi-level factors
- updated documentation of pumaPCA to make clear that the default is to use 1000 probesets, not all

[/puma] permanent link

puma
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

[/puma] permanent link

puma
Replaced usage of newly defunct class phenoData with AnnotatedDataFrame.

[/puma] permanent link

puma
Fixed .Call("ReadHeader", ..., PACKAGE="affyio") calls to match signature in affyio.

[/puma] permanent link

puma
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
Added a minimal NAMESPACE
Removed .First.lib function
Bumped version number to 1.7.5
Added eset_mmgmos.rda data file

[/puma] permanent link

puma
Updated all examples and vignettes to use Dilution dataset, not defunct affybatch.example. Bumped version.

[/puma] permanent link

puma
Changed biocViews entry of Statistics to Bioinformatics.

[/puma] permanent link

puma
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/puma] permanent link