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Bioconductor Changlog.
Thu, 18 Jun 2009
puma
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
puma
Fixed .Call("ReadHeader", ..., PACKAGE="affyio") calls to match signature in affyio.
puma
changed SET_STRING_ELT back to SET_VECTOR_ELT in pumaclust_c.c
puma
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
puma
Changed biocViews entry of Statistics to Bioinformatics.
puma
Added affydata to the Suggests field.
puma
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
Added a minimal NAMESPACE
Removed .First.lib function
Bumped version number to 1.7.5
Added eset_mmgmos.rda data file
puma
Modified all examples to use Dilution data rather than affybatch.example
Added a new data file, eset_mmgmos, created by applying mmgmos to Dilution
Moved some packages from Depends to Suggests
Minor change to createContrastMatrix to deal with uninformative factors
puma
Updated all examples and vignettes to use Dilution dataset, not defunct affybatch.example. Bumped version.
puma
in the first place - and now generate warnings
puma
Updated dependencies to kill warnings.
puma
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
puma
Replaced usage of newly defunct class phenoData with AnnotatedDataFrame.
puma
Removed support for soon to be defunct class exprSet.
puma
Update to version 1.5.3
- changes to pumaComb and create_eset_r to fix bug when using multi-level factors
- updated documentation of pumaPCA to make clear that the default is to use 1000 probesets, not all
puma
Bumped version number
Addition of local_n variable in donlp2.c to overcome a problem with gcc 4.1.2. Many thanks to Antti Honkela for this fix.