About
Click here to learn more about this blog.

Packages
Click on a link
for updates to that package only.

Subscribe
Subscribe to the Bioconductor Changlog.

preprocessCore
(1.7.4) Fix bug with floating point argument provided where integer expected. Use of non intialized value.

[/preprocessCore] permanent link

preprocessCore
(1.7.2) Returned scale estimates are computed using residuals at last iteration rather than n-1 iteration
(1.7.1)

[/preprocessCore] permanent link

preprocessCore
(1.7.1)

[/preprocessCore] permanent link

preprocessCore
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/preprocessCore] permanent link

preprocessCore
(1.5.3) fix VECTOR_ELT/STRING_ELT issues

[/preprocessCore] permanent link

preprocessCore
(1.5.2) normalize.quantiles.determine.target() and normalize.quantiles.use.target() now have a "subset" argument

[/preprocessCore] permanent link

preprocessCore
(1.19.1 affyPLM) (1.5.1 preprocessCore) Fitting the default model using fitPLM() or rcModelPLM() now returns both probe effect estimate and corresponding standard error for the last probe in the model (note that the default model constrains the sum of the probe effects to be equal to 0)

[/preprocessCore] permanent link

preprocessCore
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

[/preprocessCore] permanent link

preprocessCore
(1.3.6) Fix issue with non double arguements to normalize.quantiles.use.target()

[/preprocessCore] permanent link

preprocessCore
(1.3.4) Fix memory leak in determine_target (on pthreads enabled machines)

[/preprocessCore] permanent link

preprocessCore
(1.3.4) Fix memory leak in determine_target (on pthreads enabled machines)
(1.3.3) Fix memory leak in use_target

[/preprocessCore] permanent link

preprocessCore
(1.3.3) Fix memory leak in use_target

[/preprocessCore] permanent link

preprocessCore
(1.3.2) R_subColSummarize are now exposed at the C level

[/preprocessCore] permanent link

preprocessCore
(1.3.1) rma.background.correct() was not correctly returning value when copy ==TRUE

[/preprocessCore] permanent link

preprocessCore
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

[/preprocessCore] permanent link

preprocessCore
(1.1.9) Commit missing c source files. This should allow preprocessCore to successfully build and also pass R CMD check (which it has not done since 1.1.6)

[/preprocessCore] permanent link

preprocessCore
(1.1.9) Commit missing c source files. This should allow preprocessCore to successfully build and also pass R CMD check (which it has not done since 1.1.6)

[/preprocessCore] permanent link

preprocessCore
(1.1.8) Commit missing header files

[/preprocessCore] permanent link

preprocessCore
(1.1.7) Fix background function bindings (for use by other packages). The implementation themselves is unchanged.
(1.1.6) Addition of PLM-r and PLM-d
Adjust rcModelPLM so that it takes optional row-effect estimates
quantile normalization functions normalize.quantiles(), normalization.quantiles.determine.target(),normalize.quantiles.use.target() all now have multi-threaded support, user controlled using the R_THREADS environment variable
Move weightedkerneldensity.c from affyPLM to preprocessCore
subColSummarize* functions all now have basic multi-threaded support, user controlled using the R_THREADS

[/preprocessCore] permanent link

preprocessCore
(1.1.5) The subColSummarize* functions now return a matrix with rownames. Now it is clear which rows of the resulting summary matrix correspond to which values of the group.labels variable. This helps clarify the previous situation where it done alphabetically.

[/preprocessCore] permanent link

preprocessCore
(1.1.4) remove extranous code comment

[/preprocessCore] permanent link