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ppiStats
Revised the dependencies to have a smaller search patch footprint.

[/ppiStats] permanent link

ppiStats
i have updated the estimateCCMErrors function

[/ppiStats] permanent link

ppiStats
I have update the namespace and desc

[/ppiStats] permanent link

ppiStats
I have added the man page for the following function
I have updated the code for the new function

[/ppiStats] permanent link

ppiStats
I have updated the depends and imports in the DESC and NS; still needs work

[/ppiStats] permanent link

ppiStats
I have fixed a typo in the code which created a bug

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ppiStats
edits to estimateCCMErrorRates.R
I have added man pages and updated the dependencies and namespace to avoid cyclic dependencies

[/ppiStats] permanent link

ppiStats
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

[/ppiStats] permanent link

ppiStats
edits to ppiStats.Rnw
adding vignette ppiStats.Rnw

[/ppiStats] permanent link

ppiStats
I have updated the function to estimate fpfn rates for ppi data

[/ppiStats] permanent link

ppiStats
i have updated both the code to find the error rates

[/ppiStats] permanent link

ppiStats
updated the depends files

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ppiStats
add findAdjacent to NAMESPACE
added findAdjacent.R and .Rd

[/ppiStats] permanent link

ppiStats
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/ppiStats] permanent link

ppiStats
Fixed YEAST to org.Sc.sgd problems.

[/ppiStats] permanent link

ppiStats
I have updated the DESC to work with the NS file so it passes build and check

[/ppiStats] permanent link

ppiStats
I have updated sumStatCharts by adding three new functions

[/ppiStats] permanent link

ppiStats
I have updated the depends field in the desc file

[/ppiStats] permanent link

ppiStats
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

[/ppiStats] permanent link

ppiStats
i have added the separateExptBySize func

[/ppiStats] permanent link

ppiStats
I have created the function estimatePPIErrorRates.R based on Li and Robert's code. The PPI GS is added to
this package as well

[/ppiStats] permanent link

ppiStats
i have started a file containing functions to generate summary statistics

[/ppiStats] permanent link

ppiStats
changed depends field and bumped version

[/ppiStats] permanent link

ppiStats
fixed typo in DESCRIPTION file

[/ppiStats] permanent link

ppiStats
and bumped the version number
fixed the license, the description and the exports

[/ppiStats] permanent link

ppiStats
updates to estimateCCMErrorRates.R

[/ppiStats] permanent link

ppiStats
i am checking in man page i forgot to do

[/ppiStats] permanent link

ppiStats
Added AnnotationDbi and methods to Depends field.

[/ppiStats] permanent link

ppiStats
I have added a man page for the new function to partition expt data by size

[/ppiStats] permanent link

ppiStats
Removed unneeded geneplotter dependency.

[/ppiStats] permanent link

ppiStats
i have updated the estimatePPIErrorRates some more and will finish tomorrow
I have updated the estimatePPIErrorRates function to accept both pos and neg GS and updated the man page

[/ppiStats] permanent link