Bioconductor Changelog
   


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Sun, 21 Jun 2009

oligoClasses
FIxed mmSeqeuence for SNP chips

[/oligoClasses] permanent link

Fri, 19 Jun 2009

oligoClasses
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.

[/oligoClasses] permanent link

Thu, 28 May 2009

oligoClasses
Replaced XDataFrame with DataFrame to reflect changes in IRanges package.

[/oligoClasses] permanent link

Wed, 13 May 2009

oligoClasses
Fixed problems with sampleNames, which caused rma() to fail

[/oligoClasses] permanent link

Tue, 12 May 2009

oligoClasses
Fixed problems with sampleNames, which caused rma() to fail

[/oligoClasses] permanent link

Mon, 11 May 2009

oligoClasses
Cleaning up code

[/oligoClasses] permanent link

Wed, 22 Apr 2009

oligoClasses
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/oligoClasses] permanent link

Sat, 18 Apr 2009

oligoClasses
Cleaning up code

[/oligoClasses] permanent link

Tue, 14 Apr 2009

oligoClasses
Fixing accessors for coordinates

[/oligoClasses] permanent link

Mon, 13 Apr 2009

oligoClasses
Fixing accessors for coordinates

[/oligoClasses] permanent link

Thu, 09 Apr 2009

oligoClasses
changed initialization method for oligoSnpSet and SnpCopyNumberSet
changed setValidity for SnpLevelSet extensions

[/oligoClasses] permanent link

Sat, 28 Mar 2009

oligoClasses
Improved NAMESPACE / Added basicRMA()
Implemented changes to accommodate sequence methods that depend on biostrings/iranges. Improved templates so the final object passes check

[/oligoClasses] permanent link

Fri, 27 Mar 2009

oligoClasses
Implemented changes to accommodate sequence methods that depend on biostrings/iranges. Improved templates so the final object passes check

[/oligoClasses] permanent link

Thu, 26 Mar 2009

oligoClasses
Added TilingFeatureSet2 class to handle 2-colors applications of tiling arrays. Redefined the FeatureSet class and sampleNames method. Removed unused class.

[/oligoClasses] permanent link

Sun, 22 Mar 2009

oligoClasses
changed some of the validity checks for oligoSnpSet

[/oligoClasses] permanent link

Fri, 20 Mar 2009

oligoClasses
Cleaning up docs
Cleaning up docs
Fixed warnings from CHECK
Generalized bg/bgindex methods for FeatureSet objects

[/oligoClasses] permanent link

Thu, 19 Mar 2009

oligoClasses
Generalized bg/bgindex methods for FeatureSet objects
Added support to HT_HGU_133+ Array

[/oligoClasses] permanent link

Wed, 18 Mar 2009

oligoClasses
Improved support for NimbleGen Expression Arrays

[/oligoClasses] permanent link

Thu, 12 Mar 2009

oligoClasses
Improving support for Exon/Gene arrays

[/oligoClasses] permanent link

Tue, 10 Mar 2009

oligoClasses
Cleaning up

[/oligoClasses] permanent link

Thu, 26 Feb 2009

oligoClasses
Adding structure for version 2 of pdInfoBuilder

[/oligoClasses] permanent link

Sat, 14 Feb 2009

oligoClasses
Prep'ing to add 2nd version of db-based annotation

[/oligoClasses] permanent link

Fri, 13 Feb 2009

oligoClasses
Prep'ing to add 2nd version of db-based annotation

[/oligoClasses] permanent link

Sun, 08 Feb 2009

oligoClasses
minor updates, correct man build warnings

[/oligoClasses] permanent link

Thu, 05 Feb 2009

oligoClasses
Bumping versions...
Moving accessors from oligo to oligoClasses - Improving documentation

[/oligoClasses] permanent link

Thu, 29 Jan 2009

oligoClasses
Moved many accessors from oligo to oligoClasses. Improving organization, prep'ing to add more meaningful documentation

[/oligoClasses] permanent link

Fri, 05 Dec 2008

oligoClasses
Added classes for affy ST Exon and general affy ST arrays

[/oligoClasses] permanent link

Wed, 22 Oct 2008

oligoClasses
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

[/oligoClasses] permanent link

Wed, 15 Oct 2008

oligoClasses
Fixing a man page link to Biobase.
Added the Biobase package to link specification for Biobase classes.

[/oligoClasses] permanent link

Fri, 10 Oct 2008

oligoClasses
added a methods dependency - se if that gets the warnings down

[/oligoClasses] permanent link

Thu, 09 Oct 2008

oligoClasses
Added missing docs

[/oligoClasses] permanent link

Tue, 24 Jun 2008

oligoClasses
updated setValidity methods for snp-level set objects

[/oligoClasses] permanent link

Thu, 15 May 2008

oligoClasses
Updated classes definitions and initialization methods

[/oligoClasses] permanent link

Wed, 14 May 2008

oligoClasses
Moving definition of SnpQSet from oligo

[/oligoClasses] permanent link

Tue, 06 May 2008

oligoClasses
Bug fix: initialize for SnpCopyNumberSet

[/oligoClasses] permanent link

Wed, 30 Apr 2008

oligoClasses
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

[/oligoClasses] permanent link

Sat, 26 Apr 2008

oligoClasses
Fixing class nomenclature

[/oligoClasses] permanent link

Mon, 21 Apr 2008

oligoClasses
hopefully fixed missing links error for eSet and versioned classes in the Rd files for SnpLevelSet and GeneSTFeatureSet

[/oligoClasses] permanent link

Sat, 19 Apr 2008

oligoClasses
Adding JPG for diagram

[/oligoClasses] permanent link

Thu, 17 Apr 2008

oligoClasses
need to load tools for the vignette to work

[/oligoClasses] permanent link