About
Click here
to learn more about this blog.
Packages
Click on a link
for updates to that package only.
Subscribe
Subscribe to the
Bioconductor Changlog.
Sun, 21 Jun 2009
oligoClasses
FIxed mmSeqeuence for SNP chips
[/oligoClasses] permanent link
Fri, 19 Jun 2009
oligoClasses
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
[/oligoClasses] permanent link
Thu, 28 May 2009
oligoClasses
Replaced XDataFrame with DataFrame to reflect changes in IRanges package.
[/oligoClasses] permanent link
Wed, 13 May 2009
oligoClasses
Fixed problems with sampleNames, which caused rma() to fail
[/oligoClasses] permanent link
Tue, 12 May 2009
oligoClasses
Fixed problems with sampleNames, which caused rma() to fail
[/oligoClasses] permanent link
Mon, 11 May 2009
oligoClasses
Cleaning up code
[/oligoClasses] permanent link
Wed, 22 Apr 2009
oligoClasses
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
[/oligoClasses] permanent link
Sat, 18 Apr 2009
oligoClasses
Cleaning up code
[/oligoClasses] permanent link
Tue, 14 Apr 2009
oligoClasses
Fixing accessors for coordinates
[/oligoClasses] permanent link
Mon, 13 Apr 2009
oligoClasses
Fixing accessors for coordinates
[/oligoClasses] permanent link
Thu, 09 Apr 2009
oligoClasses
changed initialization method for oligoSnpSet and SnpCopyNumberSet
changed setValidity for SnpLevelSet extensions
[/oligoClasses] permanent link
Sat, 28 Mar 2009
oligoClasses
Improved NAMESPACE / Added basicRMA()
Implemented changes to accommodate sequence methods that depend on biostrings/iranges. Improved templates so the final object passes check
[/oligoClasses] permanent link
Fri, 27 Mar 2009
oligoClasses
Implemented changes to accommodate sequence methods that depend on biostrings/iranges. Improved templates so the final object passes check
[/oligoClasses] permanent link
Thu, 26 Mar 2009
oligoClasses
Added TilingFeatureSet2 class to handle 2-colors applications of tiling arrays. Redefined the FeatureSet class and sampleNames method. Removed unused class.
[/oligoClasses] permanent link
Sun, 22 Mar 2009
oligoClasses
changed some of the validity checks for oligoSnpSet
[/oligoClasses] permanent link
Fri, 20 Mar 2009
oligoClasses
Cleaning up docs
Cleaning up docs
Fixed warnings from CHECK
Generalized bg/bgindex methods for FeatureSet objects
[/oligoClasses] permanent link
Thu, 19 Mar 2009
oligoClasses
Generalized bg/bgindex methods for FeatureSet objects
Added support to HT_HGU_133+ Array
[/oligoClasses] permanent link
Wed, 18 Mar 2009
oligoClasses
Improved support for NimbleGen Expression Arrays
[/oligoClasses] permanent link
Thu, 12 Mar 2009
oligoClasses
Improving support for Exon/Gene arrays
[/oligoClasses] permanent link
Tue, 10 Mar 2009
oligoClasses
Cleaning up
[/oligoClasses] permanent link
Thu, 26 Feb 2009
oligoClasses
Adding structure for version 2 of pdInfoBuilder
[/oligoClasses] permanent link
Sat, 14 Feb 2009
oligoClasses
Prep'ing to add 2nd version of db-based annotation
[/oligoClasses] permanent link
Fri, 13 Feb 2009
oligoClasses
Prep'ing to add 2nd version of db-based annotation
[/oligoClasses] permanent link
Sun, 08 Feb 2009
oligoClasses
minor updates, correct man build warnings
[/oligoClasses] permanent link
Thu, 05 Feb 2009
oligoClasses
Bumping versions...
Moving accessors from oligo to oligoClasses - Improving documentation
[/oligoClasses] permanent link
Thu, 29 Jan 2009
oligoClasses
Moved many accessors from oligo to oligoClasses. Improving organization, prep'ing to add more meaningful documentation
[/oligoClasses] permanent link
Fri, 05 Dec 2008
oligoClasses
Added classes for affy ST Exon and general affy ST arrays
[/oligoClasses] permanent link
Wed, 22 Oct 2008
oligoClasses
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
[/oligoClasses] permanent link
Wed, 15 Oct 2008
oligoClasses
Fixing a man page link to Biobase.
Added the Biobase package to link specification for Biobase classes.
[/oligoClasses] permanent link
Fri, 10 Oct 2008
oligoClasses
added a methods dependency - se if that gets the warnings down
[/oligoClasses] permanent link
Thu, 09 Oct 2008
oligoClasses
Added missing docs
[/oligoClasses] permanent link
Tue, 24 Jun 2008
oligoClasses
updated setValidity methods for snp-level set objects
[/oligoClasses] permanent link
Thu, 15 May 2008
oligoClasses
Updated classes definitions and initialization methods
[/oligoClasses] permanent link
Wed, 14 May 2008
oligoClasses
Moving definition of SnpQSet from oligo
[/oligoClasses] permanent link
Tue, 06 May 2008
oligoClasses
Bug fix: initialize for SnpCopyNumberSet
[/oligoClasses] permanent link
Wed, 30 Apr 2008
oligoClasses
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/oligoClasses] permanent link
Sat, 26 Apr 2008
oligoClasses
Fixing class nomenclature
[/oligoClasses] permanent link
Mon, 21 Apr 2008
oligoClasses
hopefully fixed missing links error for eSet and versioned classes in the Rd files for SnpLevelSet and GeneSTFeatureSet
[/oligoClasses] permanent link
Sat, 19 Apr 2008
oligoClasses
Adding JPG for diagram
[/oligoClasses] permanent link
Thu, 17 Apr 2008
oligoClasses
need to load tools for the vignette to work
[/oligoClasses] permanent link