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Version bump.

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Fixes

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Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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New functions and bugfixes.

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Bib File added.

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Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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New functions: Plotfunction, nearest transitive approximation. Bugfixes.

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Several new functions. Bugfixes. Merged files.

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Changed biocViews entry of Statistics to Bioinformatics.

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New Bayesnet estimator. Several Bugfixes.

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Updates. Added function "quicknem".

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Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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Updates:
- Added new Method Generalized Nested Effects Models (GNEMs)
- Common way to set Parameters
- Sahin dataset
- Added NAMESPACE
- Bugfixes

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fixed Rdversion 2 parser warnings
fixed Rdversion 2 parser warnings

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