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multtest
added requires R>=2.9.0 so package will build without error on CRAN

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multtest
Replaced reference to soon to be defunct class exprSet with ExpressionSet.

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multtest
Fixing the DESCRIPTION file.
fixed survival function calls since now imported in NAMESPACE, incemented version number

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multtest
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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multtest
DESCRIPTION and NAMESPACE for latest fixes
fixed errors in documentation syntax
fixed t.quant.trans error

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multtest
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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multtest
removed quotes from do.call

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multtest
fixed bugs in t.pair test

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multtest
v1.99.3 major update with EBMTPs, new nulls, quantile mapping, etc
making sure Rd files is in svn
v1.99.3 major update with EBMTPs, new nulls, quantile mapping, etc
v1.99.3 major update with EBMTPs, new nulls, quantile mapping, etc
v1.99.3 major update with EBMTPs, new nulls, quantile mapping, etc

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multtest
Added if(standardize) so that control code checking for >1 unique value in each group is only used when the variance of the t-statistic actually needs to be calculated
Added if(standardize) so that control code checking for >1 unique value in each group is only used when the variance of the t-statistic actually needs to be calculated

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multtest
updated email address of author

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multtest
Man page changes to get multtest to build without error. Warnings remain.

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multtest
trying to fix up the survival issues
fixed a dependency/import issue

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multtest
further fixes to brackets to correct Rd syntax

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multtest
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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multtest
added library(survival) to vignette MTPALL since survival is now Suggest not Depends
moved survival package from Depends to Suggests, incremented version number

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multtest
Removed psfig from \usepackage{} in the .Rnw file of the following packages: MeasurementError.cor, GEOquery, rama, marray, aCGH, multtest, nnNorm, RMAGEML, ACME and bridge. Psfig/TeX was actually not needed by these vignettes. Besides Psfig/TeX has licensing issues and will be removed from our build machines.

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multtest
fixed survival function calls since now imported in NAMESPACE, incemented version number
fixed survival function calls since now imported in NAMESPACE
imported coxph.control and coxph.fit, incremented version number
imported coxph.control and coxph.fit

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multtest
Fixed the DESCRIPTION file.

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multtest
House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled.

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multtest
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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multtest
fixed parens in describe item, line 35
fixed parens in describe item, line 78
fixed parens in describe items in man files
fixed parens in describe item, line 78

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