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Bioconductor Changlog.
Tue, 13 Oct 2009
matchprobes
Moved all matchprobes functions (except combineAffyBatch) to Biostrings
and deprecated them (also modified their man pages to show how to use
Biostrings native functions to reproduce similar functionalities).
Still need to deal with the (now broken) matchprobes vignette and a few
extra things in the package that need a new home too (most likely
Biostrings, at least for now). Bumped Biostrings version to 2.11.27
matchprobes
Added registration for C functions
matchprobes
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
matchprobes
removed \itemize from Rd files sections nested in \value
matchprobes
Replaced usage of newly defunct class phenoData with AnnotatedDataFrame.
matchprobes
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
matchprobes
Updating the license reference to reflect R standards.
matchprobes
Deprecated the package. Bumped version to 1.15.4
matchprobes
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
matchprobes
Moved the whole makeProbePackage() functionality (S3 methods + functions + pkg template + datasets + doc) from matchprobes to AnnotationDbi. Bumped versions: matchprobes -> 1.15.3 and AnnotationDbi -> 1.5.14
matchprobes
Added a NAMESPACE to the package. Bumped version to 1.15.1
matchprobes
Bugfix to getProbeDataAffy. If datafile was a connection the first line (after the header) of the probe_tab file would be skipped.
matchprobes
I edited the vignette and made it clearer how to relate the probe
sequence info in the probe packages to the rows of any AffyBatch.
I also added a check for interrupts in the matchprobes C code.
matchprobes
fixed up some sloppy use of SET_VECTOR_ELT
matchprobes
Fixed a small bug: GC is now an ordered factor.
matchprobes
put broken combineAffyBatch() example in a \dontrun
matchprobes
Moved (and adapted) the matchprobes vignette to Biostrings. Bumped Biostrings and matchprobes versions to 2.11.30 and 1.15.5, respectively.