Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. Subscribe Subscribe to the Bioconductor Changlog.	Wed, 29 Apr 2009 graph Fixed DLL registration. Broken when changed name to DLL to remove conflict with graphviz. [/graph] permanent link Sat, 25 Apr 2009 graph Renamed graph.(so/dll) BioC_graph.(so/dll) to avoid conflicts with graphviz. [/graph] permanent link Tue, 21 Apr 2009 graph Bumped pkg versions for BioC 2.5 devel line. Bumped pkg versions for BioC 2.4 release. [/graph] permanent link Thu, 02 Apr 2009 graph combineNodes now takes an optional function to collapse the edges [/graph] permanent link Wed, 01 Apr 2009 graph lots of code refactoring for the combineNodes function. We still need to decide how to treat edge weights of combined edges [/graph] permanent link Tue, 31 Mar 2009 graph fixing bug in cobineNodes fixing a bug in edgeWeights when there are no edges defined [/graph] permanent link Thu, 05 Feb 2009 graph fixed Rd version 2 parser warnings [/graph] permanent link Fri, 12 Dec 2008 graph making sure that the edgeRenderInfo for arrowhead and arrowtail is reset when changing the edgemode of a graph [/graph] permanent link Thu, 11 Dec 2008 graph fixed a bug in the setter for edgeRenderInfo some clarification of the documentation for renderInfo. More might be needed later [/graph] permanent link Wed, 03 Dec 2008 graph added note to documentation about lwd behavior in nodeRenderInfo [/graph] permanent link Wed, 22 Oct 2008 graph Bumping version numbers for BioC 2.4 devel. Bumping version numbers for BioC 2.3 release. [/graph] permanent link Thu, 04 Sep 2008 graph added a (non-exported) helper function 'updateFolder' which updates all serialized graph objects (i.e., the rda files) in a folder [/graph] permanent link Tue, 26 Aug 2008 graph bumped version number added defunct graph object for test purposes [/graph] permanent link Sat, 23 Aug 2008 graph can update really old graphs now from the pre-graphData era added missing IMCAAttrs object back to the serialized graph [/graph] permanent link Tue, 22 Jul 2008 graph fixed bug in coercion method [/graph] permanent link Thu, 03 Jul 2008 graph edgemode slot is now gone [/graph] permanent link Sat, 28 Jun 2008 graph fix .ftM2other() for "self-edges" [/graph] permanent link Fri, 09 May 2008 graph fixed a bug [/graph] permanent link Wed, 30 Apr 2008 graph Updating the version number for the trunk post-BioC 2.2 release. Updating the version number for the BioC 2.2 release. [/graph] permanent link Thu, 10 Apr 2008 graph adding defaults to the nodeRenderInfo data [/graph] permanent link Sat, 01 Mar 2008 graph minor problem in pancrCaIni.Rd MAPKsig graph data is misleading; pancrCaIni pathway graph example to supersede [/graph] permanent link Wed, 13 Feb 2008 graph noted that join() will set edgeweights to 1 in resulting graph [/graph] permanent link Thu, 31 Jan 2008 graph dropped a superfluous argument from some setAs defs [/graph] permanent link Wed, 14 Nov 2007 graph updateGraph now issues a warning message when applied to up to date objects fixed a bug in edgeRenderInfo<- caused by NULL assigments [/graph] permanent link Tue, 13 Nov 2007 graph When setting edge attributes via edgeRenderInfo on undirected graphs the order of head and tail nodes in the node names is ignored, i.e. a~b is equivalent to b~a [/graph] permanent link Thu, 08 Nov 2007 graph fixed updateGraph, it can now also update object from before graphData times [/graph] permanent link Tue, 06 Nov 2007 graph supressing warnings when setting graph.pars because we do explicit checking anyways. [/graph] permanent link