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Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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supressing warnings when setting graph.pars because we do explicit checking anyways.

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Fixed DLL registration. Broken when changed name to DLL to remove conflict with graphviz.

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fixing bug in cobineNodes
fixing a bug in edgeWeights when there are no edges defined

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Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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bumped version number
added defunct graph object for test purposes

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fixed bug in coercion method

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adding defaults to the nodeRenderInfo data

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fix .ftM2other() for "self-edges"

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Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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updateGraph now issues a warning message when applied to up to date objects
fixed a bug in edgeRenderInfo<- caused by NULL assigments

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fixed a bug in the setter for edgeRenderInfo
some clarification of the documentation for renderInfo. More might be needed later

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minor problem in pancrCaIni.Rd
MAPKsig graph data is misleading; pancrCaIni pathway graph example to supersede

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lots of code refactoring for the combineNodes function. We still need to decide how to treat edge weights of combined edges

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combineNodes now takes an optional function to collapse the edges

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Standardizing reference to Artistic License 2.0.

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Renamed graph.(so/dll) BioC_graph.(so/dll) to avoid conflicts with graphviz.

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added note to documentation about lwd behavior in nodeRenderInfo

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fixed updateGraph, it can now also update object from before graphData times

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added a (non-exported) helper function 'updateFolder' which updates all serialized graph objects (i.e., the rda files) in a folder

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fixed Rd version 2 parser warnings

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fixed a bug

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When setting edge attributes via edgeRenderInfo on undirected graphs the order of head and tail nodes in the node names is ignored, i.e. a~b is equivalent to b~a

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fixing docs

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making sure that the edgeRenderInfo for arrowhead and arrowtail is reset when changing the edgemode of a graph

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can update really old graphs now from the pre-graphData era
added missing IMCAAttrs object back to the serialized graph

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noted that join() will set edgeweights to 1 in resulting graph

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edgemode slot is now gone

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dropped a superfluous argument from some setAs defs

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