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globaltest
Removed non-printable character from CITATION file to get package to pass check on Mac OS X.

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globaltest
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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globaltest
- globaltest(), gtGO() and gtKEGG() adapted to accomodate changes to annotation packages
- weights default changed in inheritance()
- arguments of inheritance() renamed

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globaltest
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

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globaltest
- fixed a bug in inheritance() sometimes causing a unended processing of the function.
- removed redundant levels in factor response in gt()
- transpose option fixed
- fixed the possibility of providing weights as a list of named vectors

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globaltest
fixed Rd version 2 parser warnings

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globaltest
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

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globaltest
Removed support for soon to be defunct class exprSet.
Replaced reference to soon to be defunct class exprSet with ExpressionSet.

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globaltest
- minsize default in gtGO() changed from 0 to 1
- focusLevel() is now proof against empty subsets

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globaltest
Fixed vignette to run by loading the survival library.

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globaltest
numerical problem in asymptotic distribution resolved

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globaltest
Changed biocViews entry of Statistics to Bioinformatics.

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globaltest
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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globaltest
hopefully a fix for the scoping issues - you really should not be quoting
names

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globaltest
minor tweaks to get the vignette to build with the new namespace

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globaltest
Complete rewrite of the globaltest package. See changelog.txt for details.

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globaltest
Updated eSet object and bumped version number.

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globaltest
- name conflict between new .weed() and deprecated .weed() resolved
- GOstructure class, makeGOstructure(), and getFocus() placed back (deprecated) for the benefit of the GlobalAncova package
- line lengths of usage in .Rd files adjusted for reference manual
- option(warn.deprecated=FALSE) set in all deprecated .Rd files to avoind warnings during check

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globaltest
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
Fixed warning due to un-exported generic for combine.

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globaltest
Empty subset now gives NA p-value rather than error

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globaltest
Removed support for soon to be defunct class exprSet.

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