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Bioconductor Changlog.
Tue, 13 Oct 2009
geneplotter
Removed smoothScatter, panel.smoothScatter, and densCols since they have been moved to graphics, lattice, and grDevices respectively.
geneplotter
Minor fix to a man page (removed broken link).
geneplotter
Updated eSet object and bumped version number.
geneplotter
Removed methods for soon to be defunct class exprSet.
geneplotter
I added a tag at the end of the HTML output
I fixed a bug in the imageMap function (a superfluous " was written in
each line).
I also removed a frivolous dependence on the pstricks latex package from
the byChroms.Rnw vignette.
geneplotter
Fixed a bug in densCols which caused a mismapping of colors to points
geneplotter
importing graphics in name space
geneplotter
Removing pdf docs from source control.
geneplotter
The multiecdf and multiecdf now try to provide a reasonable legend by
default.
geneplotter
Added 'invisible'
geneplotter
Adding pdf documents for vignettes.
Swapped usage of old style deprecated annotation paradigm with new AnnotationDbi paradigm.
geneplotter
allow multiple color support for cColor; add ... arguments to cPlot,
cColor to customize vertical ticks
geneplotter
fixing broken links in docunentation
geneplotter
Added 'invisible'
geneplotter
making sure that openHtmlPage creates a valid HTML file
geneplotter
I fixed a bug re passing on of the function arguments to eval(m,..)
geneplotter
Modifying the depends to put more on the search path given that this is a graphics package.
cleanup package dependencies (use Import smarter)
geneplotter
removed quotes from do.call
geneplotter
Added 'invisible'
I have tried to rationalize the behaviour of "xlab" and "main" argumens of the multiecdf and multidensity functions.
geneplotter
Fixed a bug in multiecdf.list and multidensity.list that affected
situations when names(x) was NULL and the legend text was not
explicitely provided. In such cases, now paste(seq(along=x)) is used for
the legend text.
geneplotter
changed much too harsh error into a warning in plotChr(..., lines.at=)
geneplotter
Formally select the Rgraphviz plot method for graph objects in the plotExpression function. Also, removed interactive() function calls in man pages that were preventing code to be run during R CMD check. These were preventing informal code checking of the package.
geneplotter
tidy up man pages a bit -- example(cPlot) etc would not run in actual session, even though passing R CMD check
geneplotter
fixing bug in smoothScatter when all values are 0
geneplotter
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
geneplotter
fixed a little bug where the dup vector was numeric, but was treated as
logical in a handful of places
geneplotter
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
geneplotter
fixed a linking issue
geneplotter
Formatting update
Small bugfix in width computation
I added a new function groupedHeatmap which uses grid.rect and grid.text
to draw a heatmap of a matrix with column and row names, and grouped
geneplotter
added argument range.x to panel.smoothscatter
geneplotter
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.