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Changed email address in all of my packages
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plotting arguments are now passed on to the time line plots
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introduced gpar argument to xyplot in order to pass along graphical parameters to the gate plotting
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updated default graphical parameters system
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changing some default colors for things
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Fixed a bug/typo in timeLinePlot function.
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bumped version
make S4 class links Windows-friendly
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fixing a bug in the flowFrame densityplot method
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fixing documentation
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bumping version number
more documentation updates
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lpolygon methods now return the gate outlines and the contour function is fixed
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improvements to the timeLine plots
using a better metric to detect temporal anomalies now in timeLinePlot
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fixing timeLine bug
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making sure we get a reasonable variance estimate in the timeLinePlots
fixed bug in desnityplot
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cleaned up code for gate plotting and added documentation
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converter from norm2Filter to ellipse
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more vignette and documentation improvements
updates of the vignette
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densityplot updates for multiple channels
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fixed bug in densityplot when data in flowFrame is empty
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fixing bug in timeLinePlot
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fixed bug in plotting of ellipse gates
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added lines and polygon methods (glines, gpolygon for now) that allow for adding of gates to existing plots
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adding alias to man pages
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added lines method for ellipsoidGates
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introducing netcdf storage for flowFrames
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improved plotting of gates
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fixed namespace
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making sure the truncated sample names are still unique
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updated DESCRIPTION
bugfix: honor xlim and ylim in 1-D plot()
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updated default graphical parameters system
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fixed xyplots for flowFrames when the time variable is discrete
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gates can be added to density plots now
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fixed a couple of bugs when plotting gates
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fixing bug in xyplot when all values are 0
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increasing size of margin bars
fixed a bug in plotting of margin events
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not plotting margin events on xy plots anymore. Instead, they are indicated by lines
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making sure we have a conditioning variable for densityplots
fixed a typo
fixing bu in contour as pointed out by Wade
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enabled grouping in densityplots
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changed default for name argument
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fixed some documentation issues
splom now uses panel.xyplot.flowframe
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