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making sure a guid is really a guid
Examples for the QA framework
added documentation for new QA framework
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flowQ
bumping version number
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fixing vignette bug
comsetic changes to the HTML output and a lot of documentation updates
FH taking over maintainership
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added first draft of QA framework
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updated vignetted to show distance values
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using shell instead of sytem to make this work on windows
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Fixed a number of bugs on Windows systems. Needs more fixing, though
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Bumped the version numbers up to 0.99.0 to prepare for inclusion in BioC 2.2.
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bumping version number
fixed the NAMESPACE because importing flowCore produced a long list of warnings
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making distinction between platforms now: Windows uses shell while the rest uses system
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updated vignette
fixed problem with checkInputs function
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fixed broken indexing for multi-panel analyses
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added qaProcess for comparision of pairwise KL distances across multiple samples
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Only check for sample indentifiers when there is more than one panel
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making sure all images are copied to the output directory when creating an HTML report
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checking for imageMagick installation now
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modified normalizeSets function, bumped ver
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pdfs verssions of the plots are optional now
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added argument to control dimensions of the graphics
importing missing function openHtmlPage in name space now
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updated multiple sample qaProcess functions to handle missing patient files
modified data file
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Fixed file path bug in the windows version
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added missing import statement
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fixed bug - replaced QAdetails with QASumGraph as one of the argumetns to writeLines function
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reverted back to revision 37649
added package genomeIntervals to bioc_2.4 manifest
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Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
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Added QA stuff for comparisons from multiple Aliquots
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Updated package with functions for multiple aliquot comparisons
updated the vignette to include stuff for multi sample comparisions
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there is a summary page for multi-panel experiments now
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fixing a bug when no patameters are plotted in the summary
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a function to re-evaluate a QA process without redrawing all the images
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bugfixes in qaReport
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updated data file
deleted data file
removed quality stuff to another vignette
added figure
modified vignette
updated the x/y scale ranges for 2DStats plot so that clusters are more visible
Added figures to the vignette
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Added grouping by variables and panels
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Updated examples for qaProcesses for densityplot,ecdfplot,KLDist, boundaryplot and vignette
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updated documentation and added a Vignette on how to create your own QA processes
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fixing documentation
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flowQ
bumped version no
Updated man pages for writeQAReport function to reflect the
additional globalProcess argument added to this function.
Updated the qaProcess.marginevents functions man page to reflect changes
with regard to displaying boundary events at the upper/lowerboundary.
Updated multiple aliquot qaProcess functions so that boundary filtering
is performed within each function
Modified writeQAReport & related methods so that the summary page
displays the multiple aliquot summary correctly.
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bumping version number
making sure the images are available when the Vignette is build
cleaning up some of the ImageMagick stuff to circumvent problems on the Windows platform
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