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Bioconductor Changlog.
Tue, 13 Oct 2009
flowQ
making sure a guid is really a guid
Examples for the QA framework
added documentation for new QA framework
flowQ
bumping version number
flowQ
fixing vignette bug
comsetic changes to the HTML output and a lot of documentation updates
FH taking over maintainership
flowQ
added first draft of QA framework
flowQ
updated vignetted to show distance values
flowQ
using shell instead of sytem to make this work on windows
flowQ
Fixed a number of bugs on Windows systems. Needs more fixing, though
flowQ
Bumped the version numbers up to 0.99.0 to prepare for inclusion in BioC 2.2.
flowQ
bumping version number
fixed the NAMESPACE because importing flowCore produced a long list of warnings
flowQ
making distinction between platforms now: Windows uses shell while the rest uses system
flowQ
updated vignette
fixed problem with checkInputs function
flowQ
fixed broken indexing for multi-panel analyses
flowQ
added qaProcess for comparision of pairwise KL distances across multiple samples
flowQ
Only check for sample indentifiers when there is more than one panel
flowQ
making sure all images are copied to the output directory when creating an HTML report
flowQ
checking for imageMagick installation now
flowQ
modified normalizeSets function, bumped ver
flowQ
pdfs verssions of the plots are optional now
flowQ
added argument to control dimensions of the graphics
importing missing function openHtmlPage in name space now
flowQ
updated multiple sample qaProcess functions to handle missing patient files
modified data file
flowQ
Fixed file path bug in the windows version
flowQ
added missing import statement
flowQ
fixed bug - replaced QAdetails with QASumGraph as one of the argumetns to writeLines function
flowQ
reverted back to revision 37649
added package genomeIntervals to bioc_2.4 manifest
flowQ
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
flowQ
Added QA stuff for comparisons from multiple Aliquots
flowQ
Updated package with functions for multiple aliquot comparisons
updated the vignette to include stuff for multi sample comparisions
flowQ
there is a summary page for multi-panel experiments now
flowQ
fixing a bug when no patameters are plotted in the summary
flowQ
a function to re-evaluate a QA process without redrawing all the images
flowQ
bugfixes in qaReport
flowQ
updated data file
deleted data file
removed quality stuff to another vignette
added figure
modified vignette
updated the x/y scale ranges for 2DStats plot so that clusters are more visible
Added figures to the vignette
flowQ
Added grouping by variables and panels
flowQ
Updated examples for qaProcesses for densityplot,ecdfplot,KLDist, boundaryplot and vignette
flowQ
updated documentation and added a Vignette on how to create your own QA processes
flowQ
fixing documentation
flowQ
bumped version no
Updated man pages for writeQAReport function to reflect the
additional globalProcess argument added to this function.
Updated the qaProcess.marginevents functions man page to reflect changes
with regard to displaying boundary events at the upper/lowerboundary.
Updated multiple aliquot qaProcess functions so that boundary filtering
is performed within each function
Modified writeQAReport & related methods so that the summary page
displays the multiple aliquot summary correctly.
flowQ
bumping version number
making sure the images are available when the Vignette is build
cleaning up some of the ImageMagick stuff to circumvent problems on the Windows platform