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Bioconductor Changlog.
Thu, 11 Jun 2009
flowQ
bumped version no
Updated man pages for writeQAReport function to reflect the
additional globalProcess argument added to this function.
Updated the qaProcess.marginevents functions man page to reflect changes
with regard to displaying boundary events at the upper/lowerboundary.
Updated multiple aliquot qaProcess functions so that boundary filtering
is performed within each function
Modified writeQAReport & related methods so that the summary page
displays the multiple aliquot summary correctly.
flowQ
Added a manpage for preProcessFlowList function, exported the function from the package, bumped the version no
flowQ
updated multiple sample qaProcess functions to handle missing patient files
modified data file
flowQ
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
flowQ
bumping version number
flowQ
bumping version number
making sure the images are available when the Vignette is build
cleaning up some of the ImageMagick stuff to circumvent problems on the Windows platform
flowQ
Updated examples for qaProcesses for densityplot,ecdfplot,KLDist, boundaryplot and vignette
flowQ
updated vignette
fixed problem with checkInputs function
flowQ
making sure all images are copied to the output directory when creating an HTML report
flowQ
fixing vignette bug
comsetic changes to the HTML output and a lot of documentation updates
FH taking over maintainership
flowQ
Updated qaprocess functions for multiple aliquots
flowQ
added man pages for locateDuplicatedParameters, normalizeSets
flowQ
Only check for sample indentifiers when there is more than one panel
flowQ
using shell instead of sytem to make this work on windows
flowQ
more details for the extension vignette
flowQ
updated vignetted to show distance values
flowQ
updated data file
deleted data file
removed quality stuff to another vignette
added figure
modified vignette
updated the x/y scale ranges for 2DStats plot so that clusters are more visible
Added figures to the vignette
flowQ
Updated package with functions for multiple aliquot comparisons
updated the vignette to include stuff for multi sample comparisions
flowQ
reverted back to revision 37649
added package genomeIntervals to bioc_2.4 manifest
flowQ
added qaProcess for comparision of pairwise KL distances across multiple samples
flowQ
Added QA stuff for comparisons from multiple Aliquots
flowQ
fixed bug - replaced QAdetails with QASumGraph as one of the argumetns to writeLines function
flowQ
pdfs verssions of the plots are optional now
flowQ
checking for imageMagick installation now
flowQ
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
flowQ
Fixed file path bug in the windows version
flowQ
fixing a bug when no patameters are plotted in the summary
flowQ
fixed broken indexing for multi-panel analyses
flowQ
making distinction between platforms now: Windows uses shell while the rest uses system
flowQ
Fixed a number of bugs on Windows systems. Needs more fixing, though
flowQ
bugfixes in qaReport
flowQ
added missing import statement
flowQ
there is a summary page for multi-panel experiments now
flowQ
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
flowQ
added argument to control dimensions of the graphics
importing missing function openHtmlPage in name space now
flowQ
bumping version number
fixed the NAMESPACE because importing flowCore produced a long list of warnings
flowQ
Bumped the version numbers up to 0.99.0 to prepare for inclusion in BioC 2.2.
flowQ
a function to re-evaluate a QA process without redrawing all the images
flowQ
updated documentation and added a Vignette on how to create your own QA processes
flowQ
adjusting for some changes in flowCore