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Bioconductor Changlog.
Tue, 13 Oct 2009
cellHTS2
the QC reports form plates also have new markup now
tooltips can be switched off
cellHTS2
allowing for empty screenlog files now
cellHTS2
Updated eSet serialized objects to include new protocolData slot. Bumped version number.
cellHTS2
minor vignette tweaks
cellHTS2
commented greeting out, it was redundant
I fixed a typo in addVig2Menu (it said cellHTS instead of cellHTS2) and added a welcome message encouraging
citations.
cellHTS2
removed quotes from do.call
cellHTS2
Cosmetic changes
cellHTS2
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
cellHTS2
fixed well color mismatch issue in plateConf tab
cellHTS2
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
cellHTS2
some test files
adding Greg's modified version
cellHTS2
allowing for missing controls in the screen plots now
cellHTS2
fixing the design of the plateList to allow for line breaks
cellHTS2
Better colors
cellHTS2
a logo
a logo
a logo
a logo
a logo
cellHTS2
Cosmetic changes
cellHTS2
Clarified documentation after comments from Florian Hahne.
cellHTS2
I revised the code of the function convertWellCoordinates for better
defaults and better error messages.
cellHTS2
scripts to generate HTML framework
some frame components for the new layout
cellHTS2
Channel names are now fetched from channelNames(x) where x is the raw assayData instead of an hardwired sequence paste("Channel", seq_len(nrChannels))
cellHTS2
moving progress report
cellHTS2
fixing documentation issues
cellHTS2
Typo fix in the bib file and in twoChannel.Rnw vignette that was blocking the pdf generation of "twoWay" "twoChannel" vignettes.
cellHTS2
a number of small cosmetic changes and fix to the makefile problem
cellHTS2
I edited the vignette, some wording updates
More wording fixes in man pages (all minor)
Wording changes in man pages, added check of length and names of "state"
to the cellHTS object's validity method.
Some wording fixes to package man page
cellHTS2
new maintainer
cellHTS2
fixed bug leading to swapped or misformated links
cellHTS2
Added sessionInfo to the supplemental vignettes.
Fixed the suggested color range for the plate plots when calling "writeReport" in the main vignette.
Arranged the way the complete version of the main vignette is handled using Makefile. This vignette is now provided in the list of available vignettes.
cellHTS2
html ouptput now with correlation plot
cellHTS2
Minor change to vignette to get the package to build on Windows.
cellHTS2
"Authors" in DESCRIPTION has been reverted to "Authors" in order to be able to compile the package
cellHTS2
Removed unneeded geneplotter dependency.
cellHTS2
The assayData really needs to be "lockedEnvironment"!
Removed the requirement that all replicates and channels for all plates
need to be present.
cellHTS2
Some improvements to error messages and behaviour when files are not
terminated by "newline", in response to correspondence with Amy Wiles.
cellHTS2
fixed annoying iFrame resize issue and added Q-Q Norm plot
fixed bug for multiChannel reports
cellHTS2
fixed broken indexing for multi-panel analyses
cellHTS2
Made available a function that creates a template screen description file.
Added to the main vignette a function that explains how to adjust cellHTS configuration files in order to be suitable for cellHTS2 package.
Updated the category analysis according to GO annotation updates (2 more GO IDs were found to be obsolete).
cellHTS2
extending for plates > 26 rows
cellHTS2
fixed warning about missing name space imports from graph
cellHTS2
introducing a new system to control settings