Bioconductor Changelog
   


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Fri, 26 Jun 2009

cellHTS2
Better warning message when script file is missing.

[/cellHTS2] permanent link

Thu, 18 Jun 2009

cellHTS2
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.

[/cellHTS2] permanent link

Thu, 11 Jun 2009

cellHTS2
extending for plates > 26 rows

[/cellHTS2] permanent link

Wed, 10 Jun 2009

cellHTS2
fixing a bug when pos and neg controls overlap

[/cellHTS2] permanent link

Tue, 09 Jun 2009

cellHTS2
fixed bug leading to swapped or misformated links

[/cellHTS2] permanent link

Tue, 19 May 2009

cellHTS2
bugfixes based on Garbor's suggestions
bumping version number

[/cellHTS2] permanent link

Thu, 07 May 2009

cellHTS2
fixing bugs when values are infinite and giving a couple of useful warnings/error message to better point out obvious problems

[/cellHTS2] permanent link

Wed, 22 Apr 2009

cellHTS
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/cellHTS] permanent link

Tue, 21 Apr 2009

cellHTS2
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/cellHTS2] permanent link

Fri, 17 Apr 2009

cellHTS
Removed unneeded geneplotter dependency.

[/cellHTS] permanent link

Thu, 16 Apr 2009

cellHTS2
Removed unneeded geneplotter dependency.

[/cellHTS2] permanent link

Tue, 14 Apr 2009

cellHTS2
bumping version number
the vignette stub should still contain the code
fixing the broken code to fetch bioMart data
vignette updates
updates to the complete vignette

[/cellHTS2] permanent link

Sat, 11 Apr 2009

cellHTS2
fixing broken makefile
fixing channel name issues when channels have been collapsed using summaryChannels
added missing method documentation

[/cellHTS2] permanent link

Wed, 18 Mar 2009

cellHTS2
Channel names are now fetched from channelNames(x) where x is the raw assayData instead of an hardwired sequence paste("Channel", seq_len(nrChannels))

[/cellHTS2] permanent link

Tue, 17 Mar 2009

cellHTS2
fixed well color mismatch issue in plateConf tab

[/cellHTS2] permanent link

Sat, 07 Mar 2009

cellHTS2
fixed minor bugs that prevented cellHTS2 to work on R-2.7.0
added crash tests, checking if cellHTS2 works with assays with 2 plates, x replicates and y channels where x and y take values in {1,2,3}

[/cellHTS2] permanent link

Fri, 06 Mar 2009

cellHTS2
Cosmetic changes

[/cellHTS2] permanent link

Thu, 05 Mar 2009

cellHTS2
Cosmetic changes

[/cellHTS2] permanent link

Sat, 28 Feb 2009

cellHTS2
fixed little bug in channel comparison plots
a number of small cosmetic changes and fix to the makefile problem

[/cellHTS2] permanent link

Fri, 27 Feb 2009

cellHTS2
a number of small cosmetic changes and fix to the makefile problem

[/cellHTS2] permanent link

Fri, 20 Feb 2009

cellHTS2
fix Rd issues found by Rdversion 2 parser: within \describe{}, \item
marco takes two arguments.

[/cellHTS2] permanent link

Wed, 18 Feb 2009

cellHTS2
fixed some documentation glitches as identified by the new rd parser

[/cellHTS2] permanent link

Thu, 12 Feb 2009

cellHTS2
using Helvetica font since Arial doesn't seem to be available on most Linux machines

[/cellHTS2] permanent link

Thu, 05 Feb 2009

cellHTS2
fixed annoying iFrame resize issue and added Q-Q Norm plot
fixed bug for multiChannel reports

[/cellHTS2] permanent link

cellHTS
fixed Rd parser warnings

[/cellHTS] permanent link

Tue, 03 Feb 2009

cellHTS2
fixing documentation issues
lots of little fixes and a first take on the vignette updates

[/cellHTS2] permanent link

Mon, 02 Feb 2009

cellHTS2
moving progress report

[/cellHTS2] permanent link

Sun, 01 Feb 2009

cellHTS2
moving progress report
the QC reports form plates also have new markup now

[/cellHTS2] permanent link

Sat, 31 Jan 2009

cellHTS2
the QC reports form plates also have new markup now
tooltips can be switched off

[/cellHTS2] permanent link

Fri, 30 Jan 2009

cellHTS2
a logo
a logo
a logo
a logo
a logo

[/cellHTS2] permanent link

Thu, 29 Jan 2009

cellHTS2
adding more tooltips
more HTML changes and fixinf the summarizeChannels function to deal with more than two channels
bumping version
many changes to the html output

[/cellHTS2] permanent link

Sat, 24 Jan 2009

cellHTS2
scatterplot

[/cellHTS2] permanent link

Fri, 23 Jan 2009

cellHTS2
sorted platelist
new plots
doro's stuff
sync with doro

[/cellHTS2] permanent link

Thu, 22 Jan 2009

cellHTS2
cleaning up some of the html and fixed the iframe resizing issue
second part of merger
first part of mergin Greg's and the svn version
more remodelling

[/cellHTS2] permanent link

Wed, 21 Jan 2009

cellHTS2
html ouptput now with correlation plot

[/cellHTS2] permanent link

Tue, 20 Jan 2009

cellHTS2
extracting individual modules from writeReport

[/cellHTS2] permanent link

Sat, 17 Jan 2009

cellHTS2
some test files
adding Greg's modified version

[/cellHTS2] permanent link

Thu, 15 Jan 2009

cellHTS2
scripts to generate HTML framework
some frame components for the new layout

[/cellHTS2] permanent link

Wed, 14 Jan 2009

cellHTS2
outline fo a new html structure for the report
nothing really

[/cellHTS2] permanent link

Tue, 13 Jan 2009

cellHTS2
some quick fixes of minor issues

[/cellHTS2] permanent link