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Bioconductor Changlog.
Fri, 26 Jun 2009
cellHTS2
Better warning message when script file is missing.
cellHTS2
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
cellHTS2
extending for plates > 26 rows
cellHTS2
fixing a bug when pos and neg controls overlap
cellHTS2
fixed bug leading to swapped or misformated links
cellHTS2
bugfixes based on Garbor's suggestions
bumping version number
cellHTS2
fixing bugs when values are infinite and giving a couple of useful warnings/error message to better point out obvious problems
cellHTS
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
cellHTS2
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
cellHTS
Removed unneeded geneplotter dependency.
cellHTS2
Removed unneeded geneplotter dependency.
cellHTS2
bumping version number
the vignette stub should still contain the code
fixing the broken code to fetch bioMart data
vignette updates
updates to the complete vignette
cellHTS2
fixing broken makefile
fixing channel name issues when channels have been collapsed using summaryChannels
added missing method documentation
cellHTS2
Channel names are now fetched from channelNames(x) where x is the raw assayData instead of an hardwired sequence paste("Channel", seq_len(nrChannels))
cellHTS2
fixed well color mismatch issue in plateConf tab
cellHTS2
fixed minor bugs that prevented cellHTS2 to work on R-2.7.0
added crash tests, checking if cellHTS2 works with assays with 2 plates, x replicates and y channels where x and y take values in {1,2,3}
cellHTS2
Cosmetic changes
cellHTS2
Cosmetic changes
cellHTS2
fixed little bug in channel comparison plots
a number of small cosmetic changes and fix to the makefile problem
cellHTS2
a number of small cosmetic changes and fix to the makefile problem
cellHTS2
fix Rd issues found by Rdversion 2 parser: within \describe{}, \item
marco takes two arguments.
cellHTS2
fixed some documentation glitches as identified by the new rd parser
cellHTS2
using Helvetica font since Arial doesn't seem to be available on most Linux machines
cellHTS2
fixed annoying iFrame resize issue and added Q-Q Norm plot
fixed bug for multiChannel reports
cellHTS
fixed Rd parser warnings
cellHTS2
fixing documentation issues
lots of little fixes and a first take on the vignette updates
cellHTS2
moving progress report
cellHTS2
moving progress report
the QC reports form plates also have new markup now
cellHTS2
the QC reports form plates also have new markup now
tooltips can be switched off
cellHTS2
a logo
a logo
a logo
a logo
a logo
cellHTS2
adding more tooltips
more HTML changes and fixinf the summarizeChannels function to deal with more than two channels
bumping version
many changes to the html output
cellHTS2
scatterplot
cellHTS2
sorted platelist
new plots
doro's stuff
sync with doro
cellHTS2
cleaning up some of the html and fixed the iframe resizing issue
second part of merger
first part of mergin Greg's and the svn version
more remodelling
cellHTS2
html ouptput now with correlation plot
cellHTS2
extracting individual modules from writeReport
cellHTS2
some test files
adding Greg's modified version
cellHTS2
scripts to generate HTML framework
some frame components for the new layout
cellHTS2
outline fo a new html structure for the report
nothing really
cellHTS2
some quick fixes of minor issues