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Bioconductor Changlog.
Sat, 27 Jun 2009
bioDist
improved implementation of KLdist functions
bioDist
updated the KLdist.matrix method for eSet, so that the correct gridsize argument is passed in
bioDist
updated the man pages
Improved the performance of the KLdist.matrix method, removed the nbins arguments, added the gridsize option for the KLdist.matrix method, changed some of the methods to dispatch on eSet instead of ExpressionSet, added sample arguments to man distance method so that the behaviour is similiar to other methods
bioDist
trying to fix up the man page here
bioDist
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
bioDist
Changed biocViews entry of Statistics to Bioinformatics.
bioDist
updated KL distance methods so that results from direct integration and binning yield similar results
bioDist
reverted back to revision 37649
added package genomeIntervals to bioc_2.4 manifest
bioDist
fixed Rd parser warnings
bioDist
updated doc for KLdist.matrix
Fixed KLdist.matrix method for signature matrix
bioDist
Updated the equation for KLDist.matrix method to incorporate division
by number of bins.
Modified the KLdist.matrix method for signature "list"
bioDist
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
bioDist
Removed usage (or reference) to pstricks tex style in BioC vignettes.
bioDist
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
bioDist
Removed Sv4 methods involving exprSet objects.
bioDist
In locf2func, added some infrastructure to automatically increase the maximum number of bins to use in locfit calls in order to support KLD.matrix() calls.
In the vignette, cleaned up text body, added a title, and and added section headings.
bioDist
Updating the license reference to reflect R standards.
bioDist
increased version
documented list method (and maybe wrote it too)
bioDist
candidate 'list' methods (KLD) for comparing samples of unequal size
bioDist
fixed an example
more changes to the bioDist set of functions
updated the code, so that we compute sample distances by default, fix some
man page issues and a new problem with the vignette