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Thu, 02 Jul 2009
beadarraySNP
Handle missing data in report files in function read.SnpSetIllumina()
[/beadarraySNP] permanent link
Fri, 19 Jun 2009
beadarraySNP
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
[/beadarraySNP] permanent link
Sat, 16 May 2009
beadarraySNP
Improved handling of beadstudio samplesheets
[/beadarraySNP] permanent link
Wed, 22 Apr 2009
beadarraySNP
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
[/beadarraySNP] permanent link
Wed, 08 Apr 2009
beadarraySNP
Setting defaults to some parameters to make check work
[/beadarraySNP] permanent link
Tue, 07 Apr 2009
beadarraySNP
improve handling of grouping arguments
[/beadarraySNP] permanent link
Sat, 28 Feb 2009
beadarraySNP
segmentation lair, index into array was faulty
[/beadarraySNP] permanent link
Thu, 26 Feb 2009
beadarraySNP
nested segmentation on intensity and Lair
[/beadarraySNP] permanent link
Wed, 25 Feb 2009
beadarraySNP
- Enable pdfQC for list of QC objects
- Make proper methods of some functions on SnpSetIllumina objects
- Fixed major bug in unpaired calculateLair
[/beadarraySNP] permanent link
Thu, 05 Feb 2009
beadarraySNP
fixed mismatches from documentation object 'setRealCN'
fixed the Rd parser warnings
[/beadarraySNP] permanent link
Fri, 26 Dec 2008
beadarraySNP
Solve conflicts between columns in Beadstudio report files
[/beadarraySNP] permanent link
Sat, 22 Nov 2008
beadarraySNP
Bugfixes in interactive plots
[/beadarraySNP] permanent link
Wed, 22 Oct 2008
beadarraySNP
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
[/beadarraySNP] permanent link
Thu, 09 Oct 2008
beadarraySNP
Lairplot fro full genome
[/beadarraySNP] permanent link
Tue, 30 Sep 2008
beadarraySNP
Documentation
[/beadarraySNP] permanent link
Fri, 19 Sep 2008
beadarraySNP
normalizeBetweenSubsamples.SNP: New normalization method
[/beadarraySNP] permanent link
Sat, 13 Sep 2008
beadarraySNP
Extra QC parameter, relative point to point difference
[/beadarraySNP] permanent link
Wed, 27 Aug 2008
beadarraySNP
Handles QC for complex beadstudio samplesheets with multiple OPA panels
[/beadarraySNP] permanent link
Wed, 30 Apr 2008
beadarraySNP
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/beadarraySNP] permanent link
Thu, 17 Apr 2008
beadarraySNP
Documentation changes to pass checks
[/beadarraySNP] permanent link
Wed, 05 Mar 2008
beadarraySNP
Replaced usage of defunct reporterInfo and "reporterInfo<-" methods with fData and "fData<-".
[/beadarraySNP] permanent link
Fri, 22 Feb 2008
beadarraySNP
Improved handling of chromosome as a factor in featureData for several reports
[/beadarraySNP] permanent link
Fri, 25 Jan 2008
beadarraySNP
Importing Beadstudio reports
[/beadarraySNP] permanent link
Mon, 07 Jan 2008
beadarraySNP
Improved handling of Beadstudio report files
[/beadarraySNP] permanent link
Wed, 19 Dec 2007
beadarraySNP
Documentation update
Improved handling of samplesheets
[/beadarraySNP] permanent link
Fri, 16 Nov 2007
beadarraySNP
Improved reading of beadstudio output
Added chiptypes
Improved IntensityPlot (arrayCGH like)
[/beadarraySNP] permanent link