About
Click here
to learn more about this blog.
Packages
Click on a link
for updates to that package only.
Subscribe
Subscribe to the
Bioconductor Changlog.
Tue, 13 Oct 2009
beadarraySNP
Replaced usage of defunct reporterInfo and "reporterInfo<-" methods with fData and "fData<-".
[/beadarraySNP] permanent link
beadarraySNP
fixed mismatches from documentation object 'setRealCN'
fixed the Rd parser warnings
[/beadarraySNP] permanent link
beadarraySNP
- Enable pdfQC for list of QC objects
- Make proper methods of some functions on SnpSetIllumina objects
- Fixed major bug in unpaired calculateLair
[/beadarraySNP] permanent link
beadarraySNP
Improved handling of beadstudio samplesheets
[/beadarraySNP] permanent link
beadarraySNP
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.
[/beadarraySNP] permanent link
[/beadarraySNP] permanent link
beadarraySNP
Extra QC parameter, relative point to point difference
[/beadarraySNP] permanent link
beadarraySNP
Bugfixes in interactive plots
[/beadarraySNP] permanent link
beadarraySNP
Setting defaults to some parameters to make check work
[/beadarraySNP] permanent link
beadarraySNP
Start of new class SnpSetSegments
[/beadarraySNP] permanent link
beadarraySNP
Solve conflicts between columns in Beadstudio report files
[/beadarraySNP] permanent link
beadarraySNP
Improved reading of beadstudio output
Added chiptypes
Improved IntensityPlot (arrayCGH like)
[/beadarraySNP] permanent link
beadarraySNP
nested segmentation on intensity and Lair
[/beadarraySNP] permanent link
beadarraySNP
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.
[/beadarraySNP] permanent link
beadarraySNP
bug in plotGenomePanels
[/beadarraySNP] permanent link
beadarraySNP
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/beadarraySNP] permanent link
beadarraySNP
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
[/beadarraySNP] permanent link
beadarraySNP
Handles QC for complex beadstudio samplesheets with multiple OPA panels
[/beadarraySNP] permanent link
beadarraySNP
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.
[/beadarraySNP] permanent link
beadarraySNP
segmentation lair, index into array was faulty
[/beadarraySNP] permanent link
beadarraySNP
Changed biocViews DNACopyNumber to CopyNumberVariants and SNPsAndGeneticVariability to SNP, GeneticVariability.
[/beadarraySNP] permanent link
beadarraySNP
Lairplot fro full genome
[/beadarraySNP] permanent link
beadarraySNP
Documentation
[/beadarraySNP] permanent link
beadarraySNP
Improved handling of chromosome as a factor in featureData for several reports
[/beadarraySNP] permanent link
beadarraySNP
Documentation changes to pass checks
[/beadarraySNP] permanent link
beadarraySNP
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
[/beadarraySNP] permanent link
beadarraySNP
Handle missing data in report files in function read.SnpSetIllumina()
[/beadarraySNP] permanent link
beadarraySNP
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
[/beadarraySNP] permanent link
beadarraySNP
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.
[/beadarraySNP] permanent link
beadarraySNP
Improved handling of Beadstudio report files
[/beadarraySNP] permanent link
beadarraySNP
improve handling of grouping arguments
[/beadarraySNP] permanent link
beadarraySNP
normalizeBetweenSubsamples.SNP: New normalization method
[/beadarraySNP] permanent link
beadarraySNP
Documentation update
Improved handling of samplesheets
[/beadarraySNP] permanent link
beadarraySNP
Importing Beadstudio reports
[/beadarraySNP] permanent link