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Wed, 28 May 2008
annaffy
Reducing R CMD check times
annaffy
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
annaffy
Small bugfix to aafGO(). The id slot of the resulting aafGO objects was incorrectly being set to the probeset ID rather than the GO ID.
annaffy
Replaced references to soon to be defunct class exprSet with ExpressionSet.
annaffy
Swapped usage of old style deprecated annotation paradigm with new AnnotationDbi paradigm.
annaffy
Fixed problem caused by 1.0 schema change.
This fix is because of a change to the 1.0 schema which broke a query
in annotation.R. The 1.0 schema changes the internal id col of all
the annotation packages from "id" to "_id". This package depends on
these schemas for an example, which is why this package broke and why
I poked my nose into Colins package. It's because I felt responsible
for the breakage. Since I put the 1.0 schemas into place recently.
Hopefully the schemas will not change again for a very very long time.
annaffy
Switching GO data source from GO package to GO.db package
annaffy
Minor fix to aaf.handler() so probe IDs will be annotated using the new .db packages.