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altcdfenvs
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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altcdfenvs
removed quotes from do.call

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altcdfenvs
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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altcdfenvs
Removed the spaces in the \alias{}.
This solves the warnings as pointed out by Martin Morgan
Attempt at fixing the warning message on the "[" method

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altcdfenvs
Removed non-printable characters from CITATION file to get package to pass check on Mac OS X.

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altcdfenvs
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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altcdfenvs
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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altcdfenvs
- Fixed latex error
- minor edition of the vignette
- Added man page for buildCdfEnv.biostrings
- Bumped version number

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altcdfenvs
- Tentative improvements to the vignette
- bumped version number

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altcdfenvs
- Fixed problem when a target sequences had no matching probes
- Added example target sequence for the vignette
- Editing of the vignette
- Bumped version number
bumped version number
More tests
Attempt at having universal node names in hypergraphs

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altcdfenvs
- Fixes in the vignette and in the man pages
- Changed obj to object in the signature of toHypergraph
- Added method toHypergraph for CdfEnvAffy

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altcdfenvs
- fix buildCdfEnv.biostrings
- conversion to hypergraphs
- updated the main vignette
- minimal unit-testing

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altcdfenvs
edit: reference for the package
class AffyProbesMatch and methods.
That class used to store matches obtained with matchPDict
unit-tests pending

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altcdfenvs
Use matchPDict in Biostrings

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altcdfenvs
escaped the escape.

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altcdfenvs
Fixed the CITATION.

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altcdfenvs
Moved CITATION to inst/ so it is properly installed.
bumped version number

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altcdfenvs
Moved CITATION to inst/ so it is properly installed.
bumped version number

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