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Bioconductor Changlog.
Thu, 02 Jul 2009
affycoretools
Added imports(AnnotationDbi, get) so things like get(goid, GOTERM) will work.
[/affycoretools] permanent link
Sun, 28 Jun 2009
affycoretools
Small fix to hyperGoutput. The output of annotation(GOHyperGResult) no longer contains the .db suffix, so this has to be added back on.
[/affycoretools] permanent link
Tue, 21 Apr 2009
affycoretools
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
[/affycoretools] permanent link
Fri, 13 Feb 2009
affycoretools
Updated BiocViews.
[/affycoretools] permanent link
Thu, 12 Feb 2009
affycoretools
One more fix to account for changes to biomaRt.
[/affycoretools] permanent link
Fri, 30 Jan 2009
affycoretools
Removed a martDisconnect(mart) from a vignette. This was breaking the package because the MySQL interface is now gone.
[/affycoretools] permanent link
Thu, 29 Jan 2009
affycoretools
Last of the changes to biomaRt-specific functions, due to the removal of MySQL interface from biomaRt.
[/affycoretools] permanent link
Wed, 28 Jan 2009
affycoretools
Bugfixes for changes in bioma
Modified biomaRt-specific functions to account for the fact that the MySQL interface has been removed from that package.
Made change to reflect removal of Dilution from the affy package. The data resides in affydata.
[/affycoretools] permanent link
Fri, 19 Dec 2008
affycoretools
Bugfix missed in last commit.
[/affycoretools] permanent link
Thu, 18 Dec 2008
affycoretools
Converted many of the dependencies from Depends to Imports. This removes the functions in these packages from the search path, which will speed things up.
[/affycoretools] permanent link
Wed, 22 Oct 2008
affycoretools
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
[/affycoretools] permanent link
Sat, 18 Oct 2008
affycoretools
updated an example, as affybatch.example is now gone
[/affycoretools] permanent link
Fri, 10 Oct 2008
affycoretools
Small bugfix to plotPCA() so arguments x.coord and y.coord now actually work.
[/affycoretools] permanent link
Tue, 26 Aug 2008
affycoretools
Bumped version number so that previous changes will be pushed out.
Removed dependency on hgfocus.db from affycoretools_biomart vignette.
[/affycoretools] permanent link
Mon, 25 Aug 2008
affycoretools
Removed hgfocus from Suggests, as it isn't used.
[/affycoretools] permanent link
Sun, 24 Aug 2008
affycoretools
Removed hgfocus from Suggests, as it isn't used.
more tweaks to modify the suggests/depends to be on .db annotations
changed the vignette depends entries
[/affycoretools] permanent link
Sun, 27 Jul 2008
affycoretools
Fixed two bugs in probes2tableBM
[/affycoretools] permanent link
Wed, 30 Apr 2008
affycoretools
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/affycoretools] permanent link
Thu, 10 Apr 2008
affycoretools
Added AnnotationDbi to the Depends field.
[/affycoretools] permanent link
Thu, 28 Feb 2008
affycoretools
Removed support for soon to be defunct class exprSet.
[/affycoretools] permanent link
Tue, 12 Feb 2008
affycoretools
Added AnnotationDbi to imports section in NAMESPACE file.
[/affycoretools] permanent link
Wed, 31 Oct 2007
affycoretools
Small bug in vennSelectFC that resulted in incorrectly named fold change columns in the output.
[/affycoretools] permanent link