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Bioconductor Changlog.
Tue, 13 Oct 2009
affyPara
Added affydata to the suggested package list to use Dilution data set. Also fixed some man page issues.
affyPara
Bug Fix in preproPara call
affyPara
Updated all examples and vignettes to use Dilution dataset, not defunct affybatch.example. Bumped version.
affyPara
read.affybatchPara added
affyPara
affyPara 1.3.5 (build 18. December 2008)
- New functions makeCluster and stopCluster (overloading snow functions)
-- cluster object will be saved as default parameter in .affyParaInternalEnv$cl
-- and default cluster object will be used in every preprocessing function
--> no more cluster object handling is required: improvement for usability!
- boxplotPara and MAplotPara improved
- documentation added and fixed for new structure
affyPara
affyPara 1.1.7 (build 17. July 2008)
- Parallelized partial loess normalization with permutation added
- all Package building errors fixed
- Package cleaning
affyPara
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
affyPara
- additional tool to boxplotPara added: bagplot
- and qaSummary added
affyPara
subsamples no work correct
affyPara
vignette update
affyPara
old code removed
Improvements in directory creation
cleanup improved
added to svn
added to svn
awfull bug in checks removed
improved functionality
affyPara
vignette update
build error removed
update for vigniette
affyPara
normalizeAffyBatchLoessPara memory improvement
affyPara
bgcPara: rm.list="ALL" added
In function initAffyBatchSF: default parameter for rm.list changed
affyPara
mergeAffyBatch improved for memory amd time
mergeAffyBatch improved for memory amd time
error for multiprocessor machines fixed
affyPara
first Version of MAplotPara added
affyPara
Adds affyPara to bioconductor 2.2
affyPara
update for figures
affyPara
- mergeAffyBatches improved for great dim matrices (-> hgu133 Plus 2.0 chips)
- initAffyBatchSF: error for small numbers of nodes fixed
-distributeFiles and removeDistributedFiles improved
(default path variable, option for removing directory before distributing, some safety checks)
affyPara
boxplotPara improved
boxplotPara functions improved
affyPara
vsnInputPara class doku added
Data distribution and removement improved for multiprocessor machines.
R help files adapted to changes.
justvsnPara Doku added
awfull bug in checks remuved
affyPara
- boxplotPara improved
- MAplotPara now works
- documentation added (no more warnings)
improvement of documentation
affyPara
small code improvements and bugfixes in distribute files (for multiporcessors)
affyPara
fix in computation time output
affyPara
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
affyPara
- vsnPara (incl. doku) added
- affyPara now works on multiprocessor machines and mulicomputer systems correctly
- a lot of code improvements especially in data distribution
affyPara
- computeExpressionSet improved
- CHANGELOG renamed to NEWS
affyPara
Parallelized vsn now supports normalization with reference
In function 'initAffyBatchSF' rm.all changed to rm.list
affyPara
update for rmaPara
affyPara
vsn TODOs removed
small bugfix in vsn2Paara
affyPara
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
small parameter update
small parameter update
affyPara
Summarization optimized
affyPara
error in justvsnPara removed
affyPara
small spelling error fixed
Bug fix for cluster with one node.
affyPara
improvement for removeFiles
small improvement for distribute files
Option verbose set to getOption("verbose") and added . to names of internal functions
affyPara
fix in vsnMatrixPara for pstartHeuristic
affyPara
Parallelized Loess normalization added
Parallelized Loess Normalization added