Bioconductor Changelog
   


About
Click here to learn more about this blog.


Packages
Click on a link
for updates to that package only.
Contam
Mvout
PLM
Para
QCReport
comp
coretools
io
lmGUI
pdnn


Subscribe
Subscribe to the Bioconductor Changlog.


       
Fri, 10 Oct 2008

affycoretools
Small bugfix to plotPCA() so arguments x.coord and y.coord now actually work.

[/affycoretools] permanent link

Tue, 30 Sep 2008

affyContam
NAMESPACE ADDED

[/affyContam] permanent link

Mon, 29 Sep 2008

affyContam
various to pass check in time

[/affyContam] permanent link

Fri, 26 Sep 2008

affylmGUI
changes on dashes to ordinary ones

[/affylmGUI] permanent link

Tue, 23 Sep 2008

affyMvout
ok

[/affyMvout] permanent link

Sat, 13 Sep 2008

affyMvout
improved DESCRIPTION description field

[/affyMvout] permanent link

Tue, 26 Aug 2008

affycoretools
Bumped version number so that previous changes will be pushed out.
Removed dependency on hgfocus.db from affycoretools_biomart vignette.

[/affycoretools] permanent link

Mon, 25 Aug 2008

affycoretools
Removed hgfocus from Suggests, as it isn't used.

[/affycoretools] permanent link

Sun, 24 Aug 2008

affycoretools
Removed hgfocus from Suggests, as it isn't used.
more tweaks to modify the suggests/depends to be on .db annotations
changed the vignette depends entries

[/affycoretools] permanent link

Sat, 23 Aug 2008

affyPara
- computeExpressionSet improved
- CHANGELOG renamed to NEWS

[/affyPara] permanent link

Thu, 14 Aug 2008

affylmGUI
Ensure line endings in CITATION are LF only - may have been cause of errors(unexpected end of input) on Mac OSX R CMD check

[/affylmGUI] permanent link

Tue, 12 Aug 2008

affyContam
the b runs
minor for finish
ok
cooad
ok
minor
minor

[/affyContam] permanent link

Sat, 09 Aug 2008

affyContam
various

[/affyContam] permanent link

Thu, 07 Aug 2008

affyMvout
new object approach

[/affyMvout] permanent link

Wed, 06 Aug 2008

affyMvout
passinc check
a new package on multivariate outlier detection with dimension reduction for affy QA

[/affyMvout] permanent link

Tue, 05 Aug 2008

affyContam
get rid of pdf
a new package devoted to structured contamination of affymetrix CEL file data

[/affyContam] permanent link

affyMvout
a new package on multivariate outlier detection with dimension reduction for affy QA

[/affyMvout] permanent link

Thu, 31 Jul 2008

affyPLM
Removed usage (or reference) to pstricks tex style in BioC vignettes.

[/affyPLM] permanent link

affycomp
Removed usage (or reference) to pstricks tex style in BioC vignettes.

[/affycomp] permanent link

affy
Removed usage (or reference) to pstricks tex style in BioC vignettes.

[/affy] permanent link

affyQCReport
Removed usage (or reference) to pstricks tex style in BioC vignettes.

[/affyQCReport] permanent link

affyio
(1.9.1) Fix parsing problem for calvin command console format CEL files on big endian machines.

[/affyio] permanent link

Wed, 30 Jul 2008

affyio
(1.9.1) Fix parsing problem for calvin command console format CEL files on big endian machines.

[/affyio] permanent link

Sun, 27 Jul 2008

affycoretools
Fixed two bugs in probes2tableBM

[/affycoretools] permanent link

Mon, 21 Jul 2008

affyPLM
(1.17.1) Fix typo in get.psi.code (Geman-McClure issue)
(see http://article.gmane.org/gmane.science.biology.informatics.conductor/19075)

[/affyPLM] permanent link

Fri, 18 Jul 2008

affyPara
affyPara 1.1.7 (build 17. July 2008)
- Parallelized partial loess normalization with permutation added
- all Package building errors fixed
- Package cleaning

[/affyPara] permanent link

Tue, 08 Jul 2008

affyPara
- mergeAffyBatches improved for great dim matrices (-> hgu133 Plus 2.0 chips)
- initAffyBatchSF: error for small numbers of nodes fixed
-distributeFiles and removeDistributedFiles improved
(default path variable, option for removing directory before distributing, some safety checks)

[/affyPara] permanent link

Fri, 04 Jul 2008

affy
(1.19.4) The method by which rma/justRMA access the median polish code from preprocess core has been changed. There should be no user noticable impact.

[/affy] permanent link

Wed, 02 Jul 2008

affypdnn
Moved 2 of the packages in Depends to Suggests

[/affypdnn] permanent link

Fri, 27 Jun 2008

affy
Clarifications to hist() and boxplot() method descriptions in Affybatch-class man page.
- Applied patch by Markus Schmidberger
https://stat.ethz.ch/pipermail/bioc-devel/2008-June/001628.html
- bumped version number

[/affy] permanent link

Tue, 24 Jun 2008

affyPara
normalizeAffyBatchLoessPara memory improvement

[/affyPara] permanent link

Mon, 16 Jun 2008

affypdnn
Propagated fixes to the changes made in the release 2.2 branch
(revision 31982)

[/affypdnn] permanent link

Fri, 13 Jun 2008

affy
Fixed affybatch.example.rda that now contains both affybatch.example and affybatch.example2.

[/affy] permanent link

Thu, 12 Jun 2008

affy
Updated affybatch.example

[/affy] permanent link

Wed, 04 Jun 2008

affyPara
vignette update

[/affyPara] permanent link

Fri, 30 May 2008

affyPara
Parallelized Loess normalization added
Parallelized Loess Normalization added

[/affyPara] permanent link

Mon, 26 May 2008

affypdnn
- fixed typo in man page
- bumped version number

[/affypdnn] permanent link

Sat, 24 May 2008

affy
Update dependency versions

[/affy] permanent link

Fri, 23 May 2008

affypdnn
Modification to make R CMD check run faster
- Added dataset with precomputed values
- Added man page for that dataset
- Bumped version number

[/affypdnn] permanent link

Sat, 17 May 2008

affyPara
small spelling error fixed
Bug fix for cluster with one node.

[/affyPara] permanent link