Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. Subscribe Subscribe to the Bioconductor Changlog.	Wed, 30 Apr 2008 SNPchip Updating the version number for the trunk post-BioC 2.2 release. Updating the version number for the BioC 2.2 release. [/SNPchip] permanent link Mon, 21 Apr 2008 SNPchip updated man pages to fix missing links on the windows platform check -- HmmPredict and RatioSnpSet classes [/SNPchip] permanent link Tue, 15 Apr 2008 SNPchip synchronize HmmPredict and SnpLevelSet instances in plotSnp method. Add accessors/documentation. [/SNPchip] permanent link Mon, 14 Apr 2008 SNPchip synchronize HmmPredict and SnpLevelSet instances in plotSnp method. Add accessors/documentation. [/SNPchip] permanent link Sat, 12 Apr 2008 SNPchip update man pages. use print instead of show in vignette [/SNPchip] permanent link Thu, 10 Apr 2008 SNPchip the show method no longer returns the recycled vector of plotting symbols...this leads to problems when plotting multiple chromosomes [/SNPchip] permanent link Sun, 06 Apr 2008 SNPchip bumped version number add documentation for ratio, classes [/SNPchip] permanent link Thu, 03 Apr 2008 SNPchip added RatioSnpSet class and basic accessors. Fixed bug in plotting of genotype colors for plotSnp methods fixed bug in recyclying of plotting symbols and colors [/SNPchip] permanent link Fri, 14 Mar 2008 SNPchip fixed bug in height.predict for plotSnp added plotting methods when HmmPredict object is provided (package now suggests VanillaICE). plotSnp returns the graphical parameters as a few are updated or modified when plotSnp is called. [/SNPchip] permanent link Tue, 11 Mar 2008 SNPchip slight change to oligoHowTo vignette [/SNPchip] permanent link Sun, 09 Mar 2008 SNPchip updates to labeling of y-axes. Put copy number in sample.snpset object on original scale. oligoHowTo shows how to compute copy number from SnpCallSetPlus object [/SNPchip] permanent link Wed, 05 Mar 2008 SNPchip corrected mistake in DESCRIPTION [/SNPchip] permanent link Tue, 04 Mar 2008 SNPchip changed description added abline option for plotting [/SNPchip] permanent link Thu, 21 Feb 2008 SNPchip moved chromosome and position methods to the oligoClasses package changed Depends to higher version of oligoClasses. UPdated vignette [/SNPchip] permanent link Fri, 08 Feb 2008 SNPchip changed the getPar method. Added chromosome2numeric function [/SNPchip] permanent link Fri, 01 Feb 2008 SNPchip updated vignette [/SNPchip] permanent link Thu, 20 Dec 2007 SNPchip several changes to how featureData is accessed for affy platforms [/SNPchip] permanent link Wed, 05 Dec 2007 SNPchip added CITATION [/SNPchip] permanent link Wed, 28 Nov 2007 SNPchip added option to graph a plot title in .plotChromosome (see op$main) [/SNPchip] permanent link Tue, 20 Nov 2007 SNPchip updated licence in the description and a few help files [/SNPchip] permanent link