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RNAither
- slightly changed some of the man pages

[/RNAither] permanent link

RNAither
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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RNAither
fixed a bug in the GO annotation function. Updated version number.

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RNAither
- fixed a bug in the mainAnalysis function (handling of Inf values)
- adapted same argument order for all normalization functions (changes in varAdjust, divNorm, quantileNormalization and controlNorm)
Added an option to superimpose histograms on control density plots; fixed a bug in the replicatesSpearmancor function; added a "showPlot" option to the functions SNRQualControl, DRQualControl, compare ReplicaPlates; added timestamps to mainAnalysis; removed printin out each iteration during BScore normalization; added a smoother span parameter the lowessNorm function; added an additional, bigger example dataset in the "data" folder; fixed an NA-related bug in several plot per plate functions; made minimal changes to the previous example dataset (added controls on each plate); supressed warnings for the functions generateDatasetFile and saveDataset; updated the vignette.

[/RNAither] permanent link

RNAither
- fixed a bug in the replicatesSpearmancor function
- fixed a bug (bin calculation) in the histogram plot functions

[/RNAither] permanent link

RNAither
Changed biocViews entry of Statistics to Bioinformatics.

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RNAither
fixed Rd issues found by Rdversion 2 parser

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RNAither
Standardizing reference to Artistic License 2.0.

[/RNAither] permanent link

RNAither
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/RNAither] permanent link

RNAither
Edited contact address and affiliation; changed the workaround for a bug that was fixed in geneplotter.

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RNAither
- fixed a bug in the mainAnalysis function
- fixed a bug in an example for the function "compareReplicateSD"

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RNAither
- fixed bug in "spatialDistrib" function, "compareReplicatesSD", and "compareReplicatesSDPerScreen".
- added "showPlot" parameter in "compareReplicateSD" function.
- improved plots in "controlDensity", "controlDensityPerPlate", and "controlDensityPerScreen" functions.
- Fixed an NA-related bug in the "ZScore" function
- Fixed a bug in the "plotControlHistoPerplate" function

[/RNAither] permanent link

RNAither
- made some slight changes in the man pages

[/RNAither] permanent link

RNAither
Adds packages RNAither, KCsmart and ArrayExpress to bioconductor.

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