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PROcess
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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PROcess
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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PROcess
Added underscores to calibration and test csv filenames to make sure files are portable to all R platforms.

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PROcess
House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled.

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