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MLInterfaces
materials to interface to gbm (bernoulli loss only)

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MLInterfaces
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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MLInterfaces
add in Jason V code to improve returns from logistic

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MLInterfaces
ok
ok

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MLInterfaces
varImp now has option to fix names from randomForest

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MLInterfaces
more varImp changes -- unfix syntactic names
varImp improvements

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MLInterfaces
doc in
various
clustering handlers
ok
various to get hclust interface in

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MLInterfaces
hclustI now working as planned, with plot method for clusteringOutput container

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MLInterfaces
starting out
for bioc 2008

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MLInterfaces
updated for 2.7 R/.db etc.

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MLInterfaces
various to get hclust interface in

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MLInterfaces
fixup
various changes to doc and to improve propagation in xvalSpec applications

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MLInterfaces
ada, fix dldaI propagation

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MLInterfaces
Changed biocViews entry of Statistics to Bioinformatics.

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MLInterfaces
getting knn.cvI in
ksvmI, more call propagation
improved call propagation, trimmed fs. code from Mlearn example
add method for missing type/classifOutput confuMat
confuMat now takes test/train argument

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MLInterfaces
Added annotate to the Depends field.

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MLInterfaces
added import for plot generic from graphics

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MLInterfaces
changes to doc to close warnings

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MLInterfaces
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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MLInterfaces
helper for viz
kmeans added

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MLInterfaces
for MLearn
introducing the MLearn for clustering
passing check with more limited symbols
various
various to pass check with choked down NAMESPACE
deal with improved S4 implementation changes, remove old non-schema interface constructs

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MLInterfaces
small buglet (no drop=FALSE) found in naiveBayesI@converter

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MLInterfaces
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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MLInterfaces
testScores for xval MLearn illustrated in classifierOutput man page

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MLInterfaces
ok
logitboost support in

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MLInterfaces
MLearn will now fail when the any of the predictors contain NA
This halts the situation where the default na.action=na.omit was triggered in model.frame
Amazingly, none of the examples or vignettes ran into this -- all had complete data!
Argues for more realistic example datasets in our testing repertory.
much changes?

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MLInterfaces
kill off randomForestB, as the underlying randomForest edits cause failure
for it but not for randomForestI

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MLInterfaces
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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