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Bioconductor Changlog.
Tue, 13 Oct 2009
MEDME
Removed unneeded dependency on IRanges, tightened up Biostrings imports and make drc and MASS imports to minimize footprint on search path.
MEDME
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
MEDME
Deleted file './src/MEDME.so'
deleted object file in the src directory that was determining a warning on a check system.
MEDME
updated MEDME.R function based on the new release of the drc library
MEDME
This adds 6 new packages to the repository and manifest.
The new packages are: MEDME, edgeR, PLPE, logitT, ArrayTools and
microRNA.
MEDME
fixed warnings produced by R CMD check
MEDME
Removing unneeded importing of Biobase and BSgenome.
MEDME
Genomic positions can now only be associated with organism name and no more with genome release.
The last genome release is recommended for the use of the CGcount function and both human and mouse
are currently supported. The definition of the MEDMEset object was revised consequently.
The genomeRelease slot and the gR method are no longer available. Rather, a new slot organism and
a new method org were added.
MEDME
Added IRanges to the Imports field to reflect recent changes in IRanges/Biostrings.
MEDME
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.
MEDME
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
MEDME
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.
MEDME
The initialize method of the MEDMEset-class was revised. In the new version probes assigned to
chromosomes other than {chr1, .., chr22, chrX, chrY} are automatically excluded.
MEDME
small revision of the MEDMEset object. The CGcount slot is now named CGcounts.