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Tue, 13 Oct 2009

MANOR
- added a CHANGELOG ;).
- updated outdated reference in the .bib file.
- changed the definition of flag "rep.flag" to avoid the error now caused by sd(NA, na.rm=TRUE).

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MANOR
- filled in "keyword" sections in .Rd files.
- removed empty "examples" sections from .Rd files.
- initialized a few variables upon declaration in C code to prevent warnings in R CMD CHECK.

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MANOR
- now use standard "keyword"s.
- changed \link{\code{stuff}} into \code{\link{stuff}}.

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MANOR
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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MANOR
- (re-)fixed warnings due to incorrect use of \item in .Rd files.
- updated references in .Rd files.
- fixed warnings due to incorrect use of \item in .Rd files.

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MANOR
- removed another non standard keyword.

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MANOR
- removed another non standard keyword.

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MANOR
Modification Ph. Hup?\195?\169
changemenent du NAMESPACE pour assurer le chargement de toutes les fonctions du package

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MANOR
- (almost) one file per function in R/
- removed empty section \details in man/qscore.Rd
- added a NAMESPACE
- removed inst/doc/Makefile (not needed anymore because no html output required)

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MANOR
only one keyword per \keyword entry...

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MANOR
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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MANOR
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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MANOR
Fixed issue related to an error as well as added descriptions to help files to remove warnings.

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MANOR
- 'norm' and 'sort' are now S3 methods as well

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MANOR
Changed biocViews DNACopyNumber to CopyNumberVariants and SNPsAndGeneticVariability to SNP, GeneticVariability.

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MANOR
- misplaced alignment tab in man/spatial.Rd.

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