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Bioconductor Changlog.
Tue, 13 Oct 2009
KCsmart
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
KCsmart
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
KCsmart
Switch to using file.path when constructing file paths rather than paste.
Fixed issue on windows machines where writing to the /tmp/ directory gave an error (as you would expect)
KCsmart
Adjusted version number
Fixed bug where using very high density data would crash the mirrorData function. Also added support for multiple sample point matrix plots in one figure and custom ylim and color
KCsmart
Fixed Rd parser warnings
Added more examples to documentation
Fixed documentation bugs
KCsmart
changed biocviews entry to more appropriate ones
fixed discrepancy between docs and code in col.names default values
KCsmart
removed whitespace from \item{chromosomes} {
KCsmart
Changed biocViews DNACopyNumber to CopyNumberVariants and SNPsAndGeneticVariability to SNP, GeneticVariability.
KCsmart
increment the version
KCsmart
Fixed version number in help file
KCsmart
Added per chromosome plotting for KCcomparative and added documentation
KCsmart
fixed Rd parser warning
KCsmart
Adds packages RNAither, KCsmart and ArrayExpress to bioconductor.
KCsmart
Fixed typo in write.table documentation
Added more detailed documentation for plot and write.table methods
Replaced sample data set
Added the KCsmart comparative component allowing the direct comparison of the aCGH data from two classes, see the documentation for more details.
It is now possible to plot multiple sample point matrices in one figure.
The findPeaks algorithm has been optimized, resulting in much faster calculations in order to find the significance threshold (used by findSigLevelTrad and findSigLevelFdr).
KCsmart
Bug fix: getSigRegionsCompKC would fail when significant regions were found on the edge of chromosomes