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Bioconductor Changlog.
Thu, 02 Jul 2009
HilbertVis
changed shrinkVector and plotLongVector to support Rle vectors
Fixed to minor typos.
updated vignette to mention that hilbertDisplay now supports Rle vectors
HilbertVisGUI
- hilbertDisplay and hilbertDisplayThreeColor now accept
Rle vectors (from IRanges)
- hilbertDisplayThreeColor now deals more sensibly with
data of different length
- the GUI understands the mnemonic keys Alt-P and Alt-N to
cycle through the data vectors
[/HilbertVisGUI] permanent link
Wed, 22 Apr 2009
HilbertVis
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
HilbertVisGUI
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
[/HilbertVisGUI] permanent link
Fri, 17 Apr 2009
HilbertVis
added CITATION file
HilbertVisGUI
added CITATION file
[/HilbertVisGUI] permanent link
Thu, 09 Apr 2009
HilbertVis
More typos.
Fixed two more typos.
Fixed Typo
HilbertVisGUI
added note that mac version is broken
[/HilbertVisGUI] permanent link
Sun, 15 Mar 2009
HilbertVisGUI
small change to configure script: Now reports an error if
gtkmm-2.4 is older than version 2.12
[/HilbertVisGUI] permanent link
Sat, 21 Feb 2009
HilbertVisGUI
Changed order in PKG_CONFIG_PATH in Makevars to get the right stuff first for Mac
[/HilbertVisGUI] permanent link
Fri, 20 Feb 2009
HilbertVis
fix dependency issues
HilbertVis
[Dummy change]
NOTE: Many of the commits prior to this message are wrongly attributed to 'whuber'
although everything should be attributed to 's.anders'. (I don't quite know how
Wolfgang's authentication information ended up in my home dir.)
HilbertVisGUI
dummy
[Dummy change]
NOTE: Many of the commits prior to this message are wrongly attributed to 'whuber'
although everything should be attributed to 's.anders'. (I don't quite know how
Wolfgang's authentication information ended up in my home dir.)
[/HilbertVisGUI] permanent link
HilbertVis
corrected URL in DESRIPTION
a strange bug cause the \itemize in shrinkVector.Rd to make R hang
HilbertVisGUI
corr URL in DESRIPTION
[/HilbertVisGUI] permanent link
Fri, 30 Jan 2009
HilbertVisGUI
added funding acknowledgement to About dialog
[/HilbertVisGUI] permanent link
Sat, 24 Jan 2009
HilbertVis
- corrections to plotLongVector
HilbertVisGUI
undo accidental change
- save button for R version
- minro changes
[/HilbertVisGUI] permanent link
HilbertVis
plotLongVector now uses segments
HilbertVisGUI
corrected nasty bug in BidirColorizer which made data between -1 and 0 appear as 0
[/HilbertVisGUI] permanent link
HilbertVis
lots of little changes
before del
HilbertVis
added seqBin
HilbertVisGUI
Palette darker/lighter buttons for R version added
[/HilbertVisGUI] permanent link
Fri, 16 Jan 2009
HilbertVisGUI
moved BidirColorizer to src/
[/HilbertVisGUI] permanent link
Thu, 15 Jan 2009
HilbertVisGUI
Application icon for MS Win
added icon for windows
Makefile corr
Version to 1.5.1.1
foo
Corrected bug in find_word
[/HilbertVisGUI] permanent link
Wed, 14 Jan 2009
HilbertVisGUI
lin plot windows close now on unloading of their data
linplot for stand-alone
[/HilbertVisGUI] permanent link
Tue, 13 Jan 2009
HilbertVisGUI
load_wiggle_data implemented
load_wiggle_toc added
[/HilbertVisGUI] permanent link
Tue, 23 Dec 2008
HilbertVisGUI
changes all *.h header files to c* to work around a bug in g++ on Tiger
[/HilbertVisGUI] permanent link
Sat, 20 Dec 2008
HilbertVisGUI
changed binary file name to 'hilbertvis'
added version number
Unloading works now
full_length is now constant over all displayed curves
Maq map loading now works
[/HilbertVisGUI] permanent link
HilbertVis
clarified EBImage problem in help page
HilbertVisGUI
This is also part of Maq's header files
We need this header file here, too.
[/HilbertVisGUI] permanent link
Sun, 07 Dec 2008
HilbertVisGUI
Icon added
[/HilbertVisGUI] permanent link
Fri, 05 Dec 2008
HilbertVis
Let's better leave EBImage out of suggests even if it gives warnings, as EBImage seems to confuse pelham.
undo commenting out in plotLongVector.Rd
Let's take the 'R CMD check' output at face value. It claims that the examplt to 'plotLongVector' is
at fault, so I commented it out
HilbertVisGUI
Sequence length can now be indicated
changes for standalone: loading of data works fine now
changes for standalone only: introduced EmptyColorizer, removed command line parameter parsing
binning now optimized
[/HilbertVisGUI] permanent link
Thu, 04 Dec 2008
HilbertVis
commented out use of EBImage from examples
put "Suggests: EBImage" in again to stop 'R CMD check' from complaining
HilbertVisGUI
- corrected a simple mistake I introduced yesterday that broke build on
Windows
- some work in stand-alone part
[/HilbertVisGUI] permanent link
Wed, 03 Dec 2008
HilbertVisGUI
put a 'try' around the call to 'hilbertDisplay' to aviod an error in a check without working X
added proper handling of missing X display
[/HilbertVisGUI] permanent link
Tue, 02 Dec 2008
HilbertVisGUI
added step_vector
sequence choosing for GFF implemeneted
[/HilbertVisGUI] permanent link
Mon, 01 Dec 2008
HilbertVis
Adding support for Mac OS X for HilbertVis and HilbertVisGUI.
HilbertVisGUI
Adding support for Mac OS X for HilbertVis and HilbertVisGUI.
[/HilbertVisGUI] permanent link