GeneRegionScan
Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.
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GeneRegionScan
-corrected missing shQuote around the metaProbeSetsFile variable in getLocalMetaprobeIntensities
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GeneRegionScan
-updated documentation of addSnpPdata to match previous update
- updated the addSnpPdata function so that it can now take individual names from pData columns. This is useful in sets such as the GSE9372 where all samples are in triplicates. This update also allowed to delete the horrible addHapMapSnpPdata function.
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GeneRegionScan
- re-created memorization of much-used-file locations, since it is clear that text file reading-and-writing in package directiony is a widespread way to approach this (OneChannelGui etc)
- added citation file, since the paper descriping the function was accepted
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GeneRfold
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
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GeneRegionScan
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
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GeneR
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
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GeneRegionScan
Fixed a man page issue involving a list of DNAString objects.
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GeneRegionScan
Changed version number to indicate that it is ready for publishing
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GeneRegionScan
Added package GeneRegionsScan to svn
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GeneRfold
fixed Rd version 2 parser warnings
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GeneR
fixed Rd version 2 parser warnings
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GeneRfold
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
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GeneR
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
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GeneRfold
Bumping the version number for release prep.
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GeneR
make it compile on openSUSE 11.0/gcc 4.3.1
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GeneR
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
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GeneRfold
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
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GeneR
House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled.
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GeneRfold
House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled.
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GeneRfold
Removing support for building GeneRfold on Windows due to its reliance on ViennaRNA library.
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GeneR
Removed reference to non-existent header file from src/readLocation.cc.
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