Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. Subscribe Subscribe to the Bioconductor Changlog.	Fri, 10 Oct 2008 GGtools internal for phasing [/GGtools] permanent link Wed, 08 Oct 2008 GGtools improved show for hbTestResults [/GGtools] permanent link Mon, 06 Oct 2008 GGtools ok hbTestResults class introduced [/GGtools] permanent link Sun, 05 Oct 2008 GGtools hbTests [/GGtools] permanent link Sat, 04 Oct 2008 GGtools ok more ok various support interface to haplo.score [/GGtools] permanent link Thu, 25 Sep 2008 GGtools added trackSet doc trackSet doc added [/GGtools] permanent link Mon, 08 Sep 2008 GGtools bump doc fixup [/GGtools] permanent link Sun, 07 Sep 2008 GGtools ok add strMultPop data source [/GGtools] permanent link Sat, 06 Sep 2008 GGtools permitting residual tests [/GGtools] permanent link Thu, 04 Sep 2008 GGtools propagating rsid through phase/tagging some changes to support mapLD usage invokePhase noted various to pass check interface to mapLD [/GGtools] permanent link Wed, 03 Sep 2008 GGtools interface to mapLD mapLD interface added [/GGtools] permanent link Sat, 30 Aug 2008 GGtools fixes, chrnum on LHS of formula getting ready for chr on LHS small snp set support ok [/GGtools] permanent link Fri, 29 Aug 2008 GGtools ok working through invokePhase depend on rpart demo output file various to support parsing Phase output [/GGtools] permanent link Thu, 28 Aug 2008 GGtools various to handle haplo Added SNPlocs.Hsapiens.dbSNP.20071016 to the Suggests field. [/GGtools] permanent link Tue, 26 Aug 2008 GGtools Moved rtracklayer into depends so things can build. [/GGtools] permanent link Sat, 23 Aug 2008 GGtools new personal haplotyping function (after running phase) phase processing trackSet support [/GGtools] permanent link Fri, 22 Aug 2008 GGtools trackSet support man page various to convert snp.matrix to PHASE input added snpm2phase drop GGdata dep [/GGtools] permanent link Thu, 21 Aug 2008 GGtools drop GGdata dep drop GGdata dep R code update to cleaned version [/GGtools] permanent link Thu, 31 Jul 2008 GGtools Removed usage (or reference) to pstricks tex style in BioC vignettes. [/GGtools] permanent link Mon, 21 Jul 2008 GGtools ok [/GGtools] permanent link Sun, 20 Jul 2008 GGtools ok various corrections related to annotating plots and supporting track export [/GGtools] permanent link Sat, 19 Jul 2008 GGtools more work on boundary cases of chrloc identification -- for plot gwSnp [/GGtools] permanent link Fri, 18 Jul 2008 GGtools added snpdepth class additional support for gene set on lhs of formula the filtered gwSnpScreen tasks are now working [/GGtools] permanent link Thu, 17 Jul 2008 GGtools fix check on psid, be sure that mapped probeId lives in featureNames fixed formula handling [/GGtools] permanent link Wed, 16 Jul 2008 GGtools various changes to facilitate gene sets and rendering improvements [/GGtools] permanent link Thu, 10 Jul 2008 GGtools fixup dQuote issue [/GGtools] permanent link Wed, 09 Jul 2008 GGtools fixup dQuote issue force updated GGBase various extensions allowing GeneSet on lhs of formulae introduced formula interface to control for confounders in phenoData kill warnings [/GGtools] permanent link Tue, 08 Jul 2008 GGtools kill warnings put the gene location in fixed up gene-set based gwSnpScreen [/GGtools] permanent link Mon, 07 Jul 2008 GGtools fixed up gene-set based gwSnpScreen [/GGtools] permanent link Sun, 06 Jul 2008 GGtools improve topSnps [/GGtools] permanent link Thu, 03 Jul 2008 GGtools deal with snpMatrix API changes [/GGtools] permanent link Tue, 20 May 2008 GGtools various doc improvements to pass check cleanly on 2.8 pass on windows ok passing check on gladstone [/GGtools] permanent link Sat, 17 May 2008 GGtools various cleanup [/GGtools] permanent link Wed, 14 May 2008 GGtools novel tools probeId support probeId minor changes for probeId [/GGtools] permanent link Mon, 05 May 2008 GGtools supp2SQLite [/GGtools] permanent link Sun, 04 May 2008 GGtools new support function improved supp2SQLite make sure it orders chromsomes suitably [/GGtools] permanent link Sat, 03 May 2008 GGtools minor changes to getAlleles for robustness tweak plot_EvG which can generate a dataframe in an inopportune point [/GGtools] permanent link Fri, 02 May 2008 GGtools tweak plot_EvG which can generate a dataframe in an inopportune point [/GGtools] permanent link Wed, 30 Apr 2008 GGtools Updating the version number for the trunk post-BioC 2.2 release. Updating the version number for the BioC 2.2 release. [/GGtools] permanent link Tue, 29 Apr 2008 GGtools improve annotation slot for 2021 [/GGtools] permanent link