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GGBase
some basics

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GGBase
plot_EvG2

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GGBase
phenoVar in

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GGBase
use snpMatrix 1.7 API

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GGBase
Changed biocViews entry of Statistics to Bioinformatics.

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GGBase
mods to featureFilter to kill the hap and qbl chroms
ok
minor fixes
new filters and doc
fixup

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GGBase
trying to pass chk

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GGBase
various steps towards renovation
dropping the sqlite approach to snp locations

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GGBase
minor changes, omit chromInds

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GGBase
error handling improved
conditions code improved

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GGBase
minor changes: internal longnsubset, coercion
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

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GGBase
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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GGBase
call reflectance

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GGBase
minor change to allow rsid subsetting on smlSet

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GGBase
now the CEU snp locations are in GGBase
inits for netCDF
fixup
fixup

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GGBase
improve screen for bad anno

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GGBase
ok
final pass

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GGBase
ok

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GGBase
various

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GGBase
it installs

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GGBase
introduce the sqlite backend for snplocs ... netcdf not adequate
dropping netCDF
new vignette
dropping the netCDF approach, using SQLite for snp locations

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GGBase
add snpsNear

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GGBase
ok
improve validation

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GGBase
trying to fix up the docs so we don't get warnings on windows

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GGBase
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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GGBase
some new classes

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GGBase
sdf

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GGBase
snpsNear to SNP
serious bug in smlSet[ chrnum, ] repaired

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GGBase
change show method for smlSet

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GGBase
change show method for smlSet

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GGBase
fixed Rd version 2 parser warnings

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GGBase
ok
put ... in plotter function for cwSnpScreen
fix doc for check

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GGBase
improved plot_EvG

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GGBase
permitting residual exploration
changes to snpsNear for more flexibility

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GGBase
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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GGBase
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

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GGBase
minor
minor
minor fixes
ok
starting class doc
LazyLoad yes

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GGBase
deal with snpMatrix update

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GGBase
Changed biocViews DNACopyNumber to CopyNumberVariants and SNPsAndGeneticVariability to SNP, GeneticVariability.

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GGBase
bad table name in man removed
fix table name
needed to update the sqlite for annotation to include offsets and version 23a contents

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