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Bioconductor Changlog.
Tue, 13 Oct 2009
GEOmetadb
Change the version number to 1.1.2 from 1.1.1 to reflect the change of function geoConvert.R
Added out_type <- tolower(out_type) to let out_type accept upper case input.
GEOmetadb
Helped fix a bug in geoConvert. Closed a database connection that was left open.
GEOmetadb
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
GEOmetadb
Added lines at the end:
Finally, it is probably a good idea to close the connection, please see \Rpackage{DBI} for detail.
<<>>=
dbDisconnect(con)
@
If you want to remove old GEOmetadb.sqlite file before retrieve a new version from the server, execute the following codes:
<<>>=
file.remove('GEOmetadb.sqlite')
@
\end{document}
Fixed geoConvert.R argument case conversion problem.
GEOmetadb
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
GEOmetadb
Added examples for geoConvert
GEOmetadb
Fix the argument mismatch between doc and function
Added http://gbnci.abcc.ncifcrf.gov/geo/
Added http://gbnci.abcc.ncifcrf.gov/geo/
Bump the version to 1.1.5
GEOmetadb
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
GEOmetadb
Changed a couple of print statements in getSQLiteFile() to cat()
statements instead--just cosmetic.
GEOmetadb
Fix the argument mismatch between doc and function
GEOmetadb
Fix the bug of failing to delete the SQLite file at the end: run dbDisconnect before return values.
GEOmetadb
version bump after modifying vignette to clean up downloaded sqlite file
GEOmetadb
Added:
GEOmetadb paper: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/23/2798 .
Removed:
Http://meltzerlab.nci.nih.gov/apps/geo
GEOmetadb
version bump for inclusion into Release 2.2
GEOmetadb
Added GEOmetadb package to bioconductor.
GEOmetadb
To make the change in geoConvert effective in the new build
out_type <- sub('smatrix','sMatrix',out_type)
GEOmetadb
Add URL: http://gbnci.abcc.ncifcrf.gov/geo/
Change download location temporarily :
download.file('http://gbnci.abcc.ncifcrf.gov/geo/GEOmetadb.sqlite.gz', destfile=localfile,mode='wb')