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Sat, 16 May 2009
GEOmetadb
Changed a couple of print statements in getSQLiteFile() to cat()
statements instead--just cosmetic.
GEOmetadb
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
GEOmetadb
Added:
GEOmetadb paper: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/23/2798 .
Removed:
Http://meltzerlab.nci.nih.gov/apps/geo
GEOmetadb
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.
GEOmetadb
Fix the argument mismatch between doc and function
GEOmetadb
Fix the argument mismatch between doc and function
Added http://gbnci.abcc.ncifcrf.gov/geo/
Added http://gbnci.abcc.ncifcrf.gov/geo/
Bump the version to 1.1.5
GEOmetadb
Add URL: http://gbnci.abcc.ncifcrf.gov/geo/
Change download location temporarily :
download.file('http://gbnci.abcc.ncifcrf.gov/geo/GEOmetadb.sqlite.gz', destfile=localfile,mode='wb')
GEOmetadb
To make the change in geoConvert effective in the new build
out_type <- sub('smatrix','sMatrix',out_type)
GEOmetadb
Change the version number to 1.1.2 from 1.1.1 to reflect the change of function geoConvert.R
Added out_type <- tolower(out_type) to let out_type accept upper case input.
GEOmetadb
Helped fix a bug in geoConvert. Closed a database connection that was left open.
GEOmetadb
Fix the bug of failing to delete the SQLite file at the end: run dbDisconnect before return values.
GEOmetadb
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
GEOmetadb
Added examples for geoConvert
GEOmetadb
version bump for inclusion into Release 2.2
GEOmetadb
version bump after modifying vignette to clean up downloaded sqlite file
GEOmetadb
Added lines at the end:
Finally, it is probably a good idea to close the connection, please see \Rpackage{DBI} for detail.
<<>>=
dbDisconnect(con)
@
If you want to remove old GEOmetadb.sqlite file before retrieve a new version from the server, execute the following codes:
<<>>=
file.remove('GEOmetadb.sqlite')
@
\end{document}
Fixed geoConvert.R argument case conversion problem.
GEOmetadb
Added GEOmetadb package to bioconductor.