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Bioconductor Changlog.
Tue, 13 Oct 2009
EBImage
fixed R CMD check memory leak (caused by a ReadImage() call after a drawtext() one); this was due to the MagickWandTerminus() destructor which also destroy MagickCore services (! see on ImageMagick wand/magick-wand.c for details)
EBImage
New EBImage.dll compiled with R2.7.0, GTK 2.12.9 and ImageMagick 6.4.1
EBImage
Tried to provide a slightly more instructive warning when GTK+ cannot
be initialised at run-time.
EBImage
minor typo in propagate man page
fixed minor typos in vignettes
fixed propagate man page and gradient computation
Removed confused text in the man page.
EBImage
Added TODO on drawtext man page.
EBImage
I fixed some formating and wordings in the installation vignette
EBImage
2.7.8
- validImage in C, removed isImage in C
- merged IndexedImage class within Image, no IndexedImage class anymore !
- removed spurious '...'
- classUnion ImageX instead of Image !
- now Image supports non-numeric storage.mode (e.g. logical) !
- ImageCall instead of Call to check Image validity and storage.mode
- deprecated: matchObject, stopIfNotImage
EBImage
fixed noGTK support
minor
fix noGTK support in display.c
EBImage
documentation Ops minor
minor
EBImage
"display", "animate", "writeImage" are now no longer generic functions,
but rather just simple functions. This is also fixes a bug that lead to
title=deparse(substitute(x)) in "display" always evaluate to "x" no
matter what expression the function was called with.
Added a request to fix the writeImage man page.
EBImage
minor test hashing features added
EBImage
I have:
- made some wording fixes in the vignettes
- added a TODO file with suggestions
- tried to make the "hist" method more useful
EBImage
2.7.6:
- fixed dy instead of dx in lib_filterThresh L37 in nFramePix = (2 * dx + 1) * (2 * dx + 1); (bug submitted by Glenn Davis)
- tile, untile, thresh: works fine on md, Color
- vignettes build OK
- translate: check param input OK
- keeping correct storage.mode after binary operations on TrueColor images
- deprecated functions moved to deprecated.R
- vignette changes: (indexing a[,,,1] instead of a[,,1] and promote usage of rgbImage)
- unit test inst/scripts/test.R added
EBImage
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
EBImage
new EBImage dll
EBImage
I fixed typos in the description file.
EBImage
EBImage.Rnw forgotten in previous commit
2.99.8
- new INSTALL
- new vignette
EBImage
I made the example of propagate simpler.
minor DESCRIPTION changes
EBImage
Remove unused BioConductor build options file.
EBImage
Added cursor position tracking in GTK image display
EBImage
export(show) back in NAMESPACE
fixed pseudo, apply.Gaussian deprecation error message in tests/test.R
Missed Rd files
2.7.15
- no warnings anymore in R CMD check
- S4 methods removed
- header and assert deprecated
- test framework added
- documentation updated
- morphKern, mkball and mkbox deprecated
- all '...' arguments removed
- horizontal slider and clean display.c code added
- zernikeMoments arguments 'pseudo' and 'apply.Gaussian' deprecated
- display and readImage argument 'colormode' deprecated
- display arguments: 'main', 'no.GTK' deprecated
- .ImageCall and ensureStorageMode functions removed
EBImage
now compiles OK + TrueColor bug fix
fixes failed example because of removed slots
- storage.mode is forced to 'numeric' after binary operations
- new fast distmap method
- castAsNumeric and castAsInteger functions added
- display uses now NEAREST_INTERPOLATION for faster and more accurate zooms
- display refreshes now the pixel location when using the scrollbars
- display now zoomes twice or half, to avoid pixel non-dyadic pixel size
- new typedef numeric
- dilatation, erosion are now performed on 'numeric' images using 'numeric' structural elements
EBImage
typo in propagate
now uses the original CellProfiler propagate() function
fixed propagate
EBImage
2.7.22
- fixed a bug preventing from reading palette images in color
- deprecated all ImageMagick functions except blur, gblur, equalize, resize and rotate
- validImage now checks validity of arrays
- new doc for ocontour, translate, resize, rotate , flip, flop
- new examples for makeBrush
EBImage
Added references to distmap man page. Added '???' to the description
of the obscure 'exact' argument.
I also fixed a typo that upset R CMD check in filter2.Rd
Added a comment to the man page.
Removed the methods with 'missing' signature, we do not want them.
I fixed wordings in man pages:
distmap.Rd
filter2.Rd
Added some more to our heavy list of TO DOs
and tried to make the mkball function a bit more useful.
EBImage
Added 'seed.centers' argument to 'propagate' that specifies whether dot-sized seeds located at the centers of the original seed objects should be used instead of finite sized seed objects.
EBImage
2.7.11: no ImageX object anymore
updated TODO list, based on WH comments
EBImage
is(x, 'Image') instead of if(class(x)=='Image')
updated man pages
EBImage
Removed spurious library lWand in configure.ac since Magick-config does a good job. This fixes the fact that EBImage didn't compile with ImageMagick 6.4.x (because lWand has been renamed to lMagickWand). I've forgotten to increase the version number in DESCRIPTION.
Removed spurious library lWand in configure.ac since Magick-config does a good job. This fixes the fact that EBImage didn't compile with ImageMagick 6.4.x (because lWand has been renamed to lMagickWand)
EBImage
Fixed some wordings in the propagate man page.
EBImage
More TODO on Zernike
zernikeMoments function and man page: What is the 'apply.Gaussian =
TRUE' argument doing? It seems bizarre. Does it make sense?
Forgot this at commit before.
I tried to clean up I/O functions and man pages.
EBImage
2.99.5
- channel OK
- paintObjects, drawtext OK
- colors.c removed
- doc: watershed
- simpler combine
minor test
minor test
EBImage
spurious print() in mkball removed
EBImage
outline method added
EBImage
Improvements and bug fixes to 'propagate' (bug did not affect its performance, but made the code a bit confusing)
EBImage
2.99.7
- stackObjects OK
2.99.6
- doc: propagate, combine, tile, untile, rmObjects, reenumerate, hullFeatures
EBImage
minor fix for Windows build and holes.png file added (needed for floodFill example)
EBImage
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.
EBImage
Some more edits, and FIXMEs, for vignette
EBImage
New EBImage.dll compiled with R2.7.0, GTK 2.12.9 and ImageMagick 6.4.1