BufferedMatrix
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/BufferedMatrix]
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BufferedMatrixMethods
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/BufferedMatrixMethods]
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BufferedMatrix
Removing unused .BBSoptions file.
[/BufferedMatrix]
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BufferedMatrixMethods
(1.3.5) Fix a bug caused by the previous commenting out correction in 1.3.4 (was incorrectly commenting out a larger block due to a "/*" rather than "*/"
[/BufferedMatrixMethods]
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BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()
[/BufferedMatrixMethods]
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BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()
[/BufferedMatrixMethods]
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BufferedMatrixMethods
(1.3.3) Change the documentation order of background correction and normalization.
[/BufferedMatrixMethods]
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BufferedMatrixMethods
(1.3.2) Add BufferedMatrix.bg.correct.normalize.quantiles() which does both RMA background correction and quantile normalization with a single function call.
(1.3.1) Add a NAMESPACE.
affyio and affy have been added as "Suggests" this aids the functions:
BufferedMatrix.read.celfiles() - read CEL file data straight into a BufferedMatrix
BufferedMatrix.read.probematrix() - read just the PM or MM probe intensities straight into a BufferedMatrix
BufferedMatrix.justRMA() - a low memory overhead RMA computing function
[/BufferedMatrixMethods]
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BufferedMatrix
(1.3.1) Add NAMESPACE.
Fix R CMD check failure on test. The nature of this was how the variance of an entire vector of NA values is computed (R throws an error where in the past it returned NA), the behavior of rowVar() and colVar() on BufferedMatrix objects remains unchanged (that is they return NA).
[/BufferedMatrix]
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