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BufferedMatrix
modified the generics for colMeans,colSums, rowMeans and rowSums to match the generic in base. Added \alias entries for these generics

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BufferedMatrix
Removed usage (or reference) to pstricks tex style in BioC vignettes.

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BufferedMatrix
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

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BufferedMatrix
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

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BufferedMatrix
Removing unused .BBSoptions file.

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BufferedMatrix
removed quotes from do.call

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BufferedMatrix
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

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BufferedMatrix
fix STRING_ELT issue
(1.7.1) Fix VECTOR_ELT/STRING_ELT issues

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BufferedMatrix
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

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BufferedMatrix
(1.3.1) Add NAMESPACE.
Fix R CMD check failure on test. The nature of this was how the variance of an entire vector of NA values is computed (R throws an error where in the past it returned NA), the behavior of rowVar() and colVar() on BufferedMatrix objects remains unchanged (that is they return NA).

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BufferedMatrix
fix STRING_ELT issue

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BufferedMatrix
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()

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BufferedMatrixMethods
(1.3.2) Add BufferedMatrix.bg.correct.normalize.quantiles() which does both RMA background correction and quantile normalization with a single function call.
(1.3.1) Add a NAMESPACE.
affyio and affy have been added as "Suggests" this aids the functions:
BufferedMatrix.read.celfiles() - read CEL file data straight into a BufferedMatrix
BufferedMatrix.read.probematrix() - read just the PM or MM probe intensities straight into a BufferedMatrix
BufferedMatrix.justRMA() - a low memory overhead RMA computing function

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BufferedMatrixMethods
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

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BufferedMatrixMethods
(1.3.3) Change the documentation order of background correction and normalization.

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BufferedMatrixMethods
Bumping version numbers for BioC 2.4 devel.
Bumping version numbers for BioC 2.3 release.

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BufferedMatrixMethods
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.

[/BufferedMatrixMethods] permanent link

BufferedMatrixMethods
Bumped pkg versions for BioC 2.5 devel line.
Bumped pkg versions for BioC 2.4 release.

[/BufferedMatrixMethods] permanent link

BufferedMatrixMethods
(1.3.5) Fix a bug caused by the previous commenting out correction in 1.3.4 (was incorrectly commenting out a larger block due to a "/*" rather than "*/"

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BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()

[/BufferedMatrixMethods] permanent link

BufferedMatrixMethods
Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

[/BufferedMatrixMethods] permanent link