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Wed, 30 Apr 2008
BufferedMatrix
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/BufferedMatrix] permanent link
BufferedMatrixMethods
Updating the version number for the trunk post-BioC 2.2 release.
Updating the version number for the BioC 2.2 release.
[/BufferedMatrixMethods] permanent link
Fri, 14 Mar 2008
BufferedMatrix
Removing unused .BBSoptions file.
[/BufferedMatrix] permanent link
Sun, 02 Mar 2008
BufferedMatrixMethods
(1.3.5) Fix a bug caused by the previous commenting out correction in 1.3.4 (was incorrectly commenting out a larger block due to a "/*" rather than "*/"
[/BufferedMatrixMethods] permanent link
Thu, 28 Feb 2008
BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()
[/BufferedMatrixMethods] permanent link
Wed, 27 Feb 2008
BufferedMatrixMethods
(1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA()
[/BufferedMatrixMethods] permanent link
Thu, 21 Feb 2008
BufferedMatrixMethods
(1.3.3) Change the documentation order of background correction and normalization.
[/BufferedMatrixMethods] permanent link
Wed, 20 Feb 2008
BufferedMatrixMethods
(1.3.2) Add BufferedMatrix.bg.correct.normalize.quantiles() which does both RMA background correction and quantile normalization with a single function call.
(1.3.1) Add a NAMESPACE.
affyio and affy have been added as "Suggests" this aids the functions:
BufferedMatrix.read.celfiles() - read CEL file data straight into a BufferedMatrix
BufferedMatrix.read.probematrix() - read just the PM or MM probe intensities straight into a BufferedMatrix
BufferedMatrix.justRMA() - a low memory overhead RMA computing function
[/BufferedMatrixMethods] permanent link
Tue, 19 Feb 2008
BufferedMatrix
(1.3.1) Add NAMESPACE.
Fix R CMD check failure on test. The nature of this was how the variance of an entire vector of NA values is computed (R throws an error where in the past it returned NA), the behavior of rowVar() and colVar() on BufferedMatrix objects remains unchanged (that is they return NA).
[/BufferedMatrix] permanent link