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Sat, 04 Oct 2008
ArrayExpress
More comprehensive man pages and vignettes. Add the queryAE function to answer the reviewer comments.
[/ArrayExpress] permanent link
Fri, 03 Oct 2008
ArrayExpress
Divided the main function ArrayExpress into two functions:
- getAE to download and unzip the archive from the database.
- magetab2bioc to convert mage tab files into bioconductor object even
if the files are stored locally.
- The function AEproc2bioc, by Juok Cho, is made to deal with processed data.
[/ArrayExpress] permanent link
Wed, 10 Sep 2008
ArrayExpress
Check that array data exists in the phenodata in the build.es function
[/ArrayExpress] permanent link
Thu, 04 Sep 2008
ArrayExpress
Fix the special character from the man page
[/ArrayExpress] permanent link
Fri, 15 Aug 2008
ArrayExpress
Uncomment the example in man.
[/ArrayExpress] permanent link
Thu, 07 Aug 2008
ArrayExpress
Correct extract.zip.r to make it work on Windows
[/ArrayExpress] permanent link
Wed, 06 Aug 2008
ArrayExpress
add the QT_list.txt file in inst/doc
Major changes that allow the package to cover most of the database
[/ArrayExpress] permanent link
Tue, 08 Jul 2008
ArrayExpress
Fix problem with Feature Extraction and error messages clearer for dyes in separate files
[/ArrayExpress] permanent link
Fri, 04 Jul 2008
ArrayExpress
Handling of multiple array design
[/ArrayExpress] permanent link
Sat, 14 Jun 2008
ArrayExpress
Clearer error messages
[/ArrayExpress] permanent link
Thu, 05 Jun 2008
ArrayExpress
Remove the ArrayExpress2 function which becomes useless
Extend ArrayExpress function to other data types than affy. Functions based on the QT and the scanner name.
[/ArrayExpress] permanent link
Fri, 18 Apr 2008
ArrayExpress
Delete the files copied from the website when an error occurs and kills
the program.
[/ArrayExpress] permanent link
Tue, 11 Mar 2008
ArrayExpress
Add the phenoData to Affy objects created with ArrayExpress and add the save argument to the ArrayExpress2 function
[/ArrayExpress] permanent link
Fri, 07 Mar 2008
ArrayExpress
Does not replace 0 by NA anymore
?\195?\130add the phenoData
[/ArrayExpress] permanent link
Wed, 27 Feb 2008
ArrayExpress
Set the arguments of download.file and extract.zip so that it works under Windows
[/ArrayExpress] permanent link
Tue, 26 Feb 2008
ArrayExpress
?\195?\130?\194?\163Change default tempoutdir
[/ArrayExpress] permanent link
Thu, 14 Feb 2008
ArrayExpress
Add functions, help files, namespace and vignette
[/ArrayExpress] permanent link
Wed, 23 Jan 2008
ArrayExpress
A new package by Audrey Kauffmann to access the ArrayExpress Repository
[/ArrayExpress] permanent link