Bioconductor Changelog
   


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ABarray
ACME
AffyCompatible
AffyExpress
AnnBuilder
AnnotationDbi
ArrayExpress
ArrayTools
BAC
BCRANK
BGmix
BSgenome
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Biobase
BiocCaseStudies
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Category
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DNAcopy
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EBImage
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GEOmetadb
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GGtools
GLAD
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GeneMeta
GeneR
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GeneSpring
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GeneticsBase
GeneticsDesign
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GraphAT
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HELP
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OCplus
OLIN
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PGSEA
PLPE
PROcess
RBGL
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RankProd
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Rdbi
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RefPlus
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Rgraphviz
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Ruuid
SAGx
SBMLR
SIM
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affxparser
affy
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affyPLM
affyPara
affyQCReport
affycomp
affycoretools
affyio
affylmGUI
affypdnn
altcdfenvs
annaffy
annotate
annotationTools
apComplex
aroma.light
arrayMagic
arrayMvout
arrayQuality
arrayQualityMetrics
beadarray
beadarraySNP
bgafun
bgx
bioDist
biocGraph
biocViews
biomaRt
bridge
buildBioC
cellHTS
cellHTS2
cghMCR
chipseq
clusterStab
codelink
convert
copa
cosmo
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ctc
daMA
diffGeneAnalysis
domainsignatures
dualKS
ecolitk
edd
edgeR
exonmap
explorase
externalVector
factDesign
fbat
fdrame
flowClust
flowCore
flowDB
flowQ
flowUtils
flowViz
gaga
gaggle
gcrma
genArise
geneRecommender
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geneplotter
globaltest
goCluster
goProfiles
goTools
gpls
graph
hexbin
hopach
hypergraph
idiogram
impute
iterativeBMA
iterativeBMAsurv
keggorth
lapmix
limma
limmaGUI
logicFS
logitT
lumi
maCorrPlot
maDB
maSigPro
maanova
macat
made4
maigesPack
makePlatformDesign
makecdfenv
marray
matchprobes
mdqc
metaArray
miRNApath
microRNA
minet
multiscan
multtest
ncdfExts
nem
nnNorm
nudge
occugene
oligo
oligoClasses
oneChannelGUI
ontoTools
pairseqsim
pamr
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parody
pathRender
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pcot2
pdInfoBuilder
pdmclass
pgUtils
pickgene
pkgDepTools
plateCore
plgem
plier
plw
ppiStats
prada
preprocessCore
prism
puma
quantsmooth
qvalue
rHVDM
rama
rbsurv
reb
rflowcyt
rhdf5
rsbml
rtracklayer
safe
sagenhaft
seqLogo
sigPathway
siggenes
simpleaffy
simulatorAPMS
sizepower
smoothMiner
snapCGH
snpMatrix
spikeLI
spkTools
splicegear
splots
spotSegmentation
sscore
ssize
stam
stepNorm
tilingArray
timecourse
tkWidgets
topGO
twilight
vbmp
vsn
weaver
webbioc
widgetInvoke
widgetTools
xcms
xcmsGUI
xps
yaqcaffy


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Wed, 25 Jun 2008

matchprobes
Bugfix to getProbeDataAffy. If datafile was a connection the first line (after the header) of the probe_tab file would be skipped.

[/matchprobes] permanent link

AnnotationDbi
Fixes minor bug with the package checking code.
This bug would have prevented some packages which legitimately might
have had some empty fields for GO terms (this came up with the Sakai
strain of E coli), from passing check.

[/AnnotationDbi] permanent link

RpsiXML
Trivial change: Description file the contact info of Tony completed; validate file function temporarily not exported so the test lines are also commented out
validate function does not export for now

[/RpsiXML] permanent link

oneChannelGUI
Setting gene-level annotation for genechip EXON 1.0 ST using org.XX.db and exon-level annotation via biomaRt.

[/oneChannelGUI] permanent link

multiscan
Help file has been included for the plot.multiscan function which now optionally creates the residual plots. Vignette and help documents revised.

[/multiscan] permanent link