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Bioconductor Changlog.
Fri, 20 Jun 2008
ShortRead
Rename SRSet slots seqData -> sequenceData, featureData -> readData,
per discussion with Martin. Still discussing whether sequenceData even
belongs in SRSet.
Add stubs for Roche 454 support, along with proposed common base
classes for Solexa and Roche (and hopefully others).
verbose to qa, plus bug fix in qa summary
Biostrings
Moved the coverage calculations for IRanges down to C to speed up calculations.
Merged the latest changes from the testing branch of Biostrings [merge -r 32268:32356]. This is a complete redesign of the PDict class hierarchy and the PDict() constructor (see NEWS file for the list of visible changes). Also fixed the problem with matchPDict()/countPDict() raising a silly error when the 'pdict' argument didn't contain all the DNA base letters.
GenomeGraphs
Modified some help pages fixed the R CHECK problem.
[/GenomeGraphs] permanent link