About
Click here
to learn more about this blog.
Packages
Click on a link
for updates to that package only.
Subscribe
Subscribe to the
Bioconductor Changlog.
Tue, 10 Jun 2008
AnnotationDbi
Removed old dependencies for GO and hgu95av2
There were some examples in the vignette of how we used to do things.
These have been set to eval=false and the dependencies have been
[/AnnotationDbi] permanent link
GSEABase
Depends; graph rather than Imports; importFrom(graph, union)
- further check-in revising unit test code
Depends; graph rather than Imports; importFrom(graph, union)
- Depends since OBO's can be coerced to graphNEL objects
- reuse union generic because this seems to be necessary for R CMD
check, https://stat.ethz.ch/pipermail/r-devel/2008-June/049933.html
Biostrings
Removing calculation of alignment profile since its cost outweighs its benefits.
BGmix
should work on Windows now
xcms
helper method added for xcmsRaw.collect
added helper method for collect
fixed typo
forgot ,
export new MS/MS searching methods
Added collect to xcmsRaw to convert to xcmsFragments, for searching
NB findPeaks method doesn't alway pick up all peaks that have ms^n data on them.
Ported phenoData code from 1.13.2
Fixed a typo
Added MS/MS searching methods. searchMetlin and similarity search methods for MS/MS data.
Fixed documentation
Added dirty nasty methods to find different metabolotes in metlin XML. the collision energy, name, mode (+/-)
Added MS/MS parser for metlin XML MS/MS data
Fix call to MassSpecWavelet