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Bioconductor Changlog.
Fri, 25 Apr 2008
GGtools
problem with sample subseting addressed
arrayQuality
AP: removed useless .gif generated by MS word
AP: update version number
AP: reloaded the file with proper names
AP: removed old directory with space
[/arrayQuality] permanent link
limma
24 April 2008: limma 2.13.9
- normalizeBetweenArrays(method="vsn") now gives an error
if object is an MAList.
- normalizeBetweenArrays(method="vsn") now uses vsnMatrix()
when the data object is a matrix.
pdInfoBuilder
pass check -- ST seed needs more doc
[/pdInfoBuilder] permanent link
RBGL
updated the description
Biostrings
Renamed the BStringViews class -> XStringViews (long due change!). Bumped version to 2.7.52.
Implemented the quality-based substitution matrix method of Ketil Malde.
BSgenome
Following renaming of the BStringViews class -> XStringViews in Biostrings. Bumped version to 1.7.8.
PROcess
Added underscores to calibration and test csv filenames to make sure files are portable to all R platforms.
Rtreemix
update of ExtendedVignette.pdf
updated bib file for Rtreemix.Rnw
updated bib file for Rtreemix.Rnw
updated Rtreemix.Rnw
Rplots file deleted
updated man files
XDE
this fixes the bug in the XDE vignette. For some reason running 3 iterations of the model produces a warning, so this code chunk is no longer evaluated
ppiStats
i am checking in man page i forgot to do
oligo
minor doc changes to get through check