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Wed, 23 Apr 2008
maDB
Removed a non-ASCII character from tkfiUnited.R file.
Biostrings
Removing integer specification from substitution matrix.
Allow users to specify XString objects for the string quality scores in pairwiseAlignment.
Modified how character based quality scores are converting into [0, 1] metrics during pairwiseAlignment.
Added the ability to use characters for the quality measures of the strings in pairwiseAlignment.
To the pairwiseAlignment function:
1) Added a scoreOnly parameter for returning just the score (and not that alignment).
2) Renamed matchScoring parameter to substitutionMatrix.
GeneticsBase
Add numbers to code chunks in SummaryTables.Rnw to make errors easier to locate
[/GeneticsBase] permanent link