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Bioconductor Changlog.
Thu, 17 Apr 2008
AnnotationDbi
Fixed bug where wrong type of ID causes ins. of spaces
This fixed a bug where R was automatically casting numeric IDs to be
numbers which would cause spaces to be inserted downstream when these
data would be stuck into the database.
[/AnnotationDbi] permanent link
oligoClasses
need to load tools for the vignette to work
[/oligoClasses] permanent link
beadarraySNP
Documentation changes to pass checks
[/beadarraySNP] permanent link
limma
16 April 2008: limma 2.13.8
- bug fix to normalizeBetweenArrays(method="vsn"). When the
function was updated on 14 December 2007 to use vsnMatrix,
it had not been noticed that vsnMatrix returns log2 results
whereas the older vsn function returned loge results. The
results returned by normalizeBetweenArrays(method="vsn") are
again now log2, similar to before 14 December 2007.
- method option "neldermean" for normexp.fit() corrected
to "neldermead"
- deprecated function splitName() removed
- the help page for backgroundCorrect edited for improved
readability
altcdfenvs
- Fixed latex error
- minor edition of the vignette
- Added man page for buildCdfEnv.biostrings
- Bumped version number
Biostrings
A first pass at a function for generating global, local, and overlap pairwise alignments. This new pairwiseAlignment function expands on the needwunsQS function.
Replaced previous MaskedXString draft by a better design for the MaskedXString
family of containers. This is a deep change in how masking sequences is handled.
Needed to make lots of internal changes and additions in order to support this
new masking mechanism. Version bumped to 2.7.45
Ringo
improvements to preprocessing functions and extended README on example data
xcms
docu fix
ppiStats
I have fixed a typo in the code which created a bug
apComplex
minor labelling fix in plotComplex.R