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ABarray
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BiocCaseStudies
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XDE
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affxparser
affy
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affyPara
affyQCReport
affycomp
affycoretools
affyio
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affypdnn
altcdfenvs
annaffy
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annotationTools
apComplex
aroma.light
arrayMagic
arrayQuality
arrayQualityMetrics
beadarray
beadarraySNP
bgafun
bgx
bioDist
biocGraph
biocViews
biomaRt
bridge
buildBioC
cellHTS
cellHTS2
cghMCR
clusterStab
codelink
convert
copa
cosmo
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ctc
daMA
diffGeneAnalysis
ecolitk
edd
exonmap
explorase
externalVector
factDesign
fbat
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flowClust
flowCore
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gaga
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geneRecommender
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lapmix
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logicFS
lumi
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maanova
macat
made4
maigesPack
makePlatformDesign
makecdfenv
marray
matchprobes
mdqc
metaArray
multtest
ncdfExts
nem
nnNorm
nudge
occugene
oligo
oligoClasses
oneChannelGUI
ontoTools
pairseqsim
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pathRender
pcaMethods
pcot2
pdInfoBuilder
pdmclass
pgUtils
pickgene
pkgDepTools
plateCore
plgem
plier
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prada
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prism
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quantsmooth
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rHVDM
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reb
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safe
sagenhaft
seqLogo
sigPathway
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simpleaffy
simulatorAPMS
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smoothMiner
snapCGH
snpMatrix
spikeLI
spkTools
splicegear
splots
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sscore
ssize
stam
stepNorm
tilingArray
timecourse
tkWidgets
topGO
twilight
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vsn
weaver
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widgetInvoke
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xcms
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altcdfenvs
- Tentative improvements to the vignette
- bumped version number

[/altcdfenvs] permanent link

affxparser
more updates for CHP files, MultiData files begun

[/affxparser] permanent link

SNPchip
synchronize HmmPredict and SnpLevelSet instances in plotSnp method. Add accessors/documentation.

[/SNPchip] permanent link

VanillaICE
added accessors/replacement methods for HmmOptions class

[/VanillaICE] permanent link