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Bioconductor Changlog.
Sat, 12 Apr 2008
GGtools
new approach to snp locations via GGdata dynamic exports
flowViz
cleaned up code for gate plotting and added documentation
oligoClasses
added skeleton man pages
added skeleton man pages for AffyGeneSTPDInfo GeneSTFeatureSet
[/oligoClasses] permanent link
GEOmetadb
Added examples for geoConvert
GeneSelector
Bumped the version number to prepare for BioC 2.2 release.
[/GeneSelector] permanent link
flowCore
moved all plotting stuff to flowViz, flowCore now issues a message to attach flowViz for all plotting
RBioinf
Bumped the version number to prepare for the BioC 2.2 release.
GenomeGraphs
Commiting a small number of changes: made the drawGD method public, allowed for the biomart member variable of a GeneRegion to be NULL - this change is to allow for the introduction of a annotationSource object.
[/GenomeGraphs] permanent link
affxparser
added code for legacy genotyping arrays
mostly working on the Resequencing arrays
fixed a couple of bugs in the CHP parsing code
more mods for CHP files
SNPchip
update man pages. use print instead of show in vignette
xcms
Import xcms from BioC 2.1
Final commit as 1.11.18
XDE
added documentation for xapply. Still warning messages in the vignette
added warning message for low c2 (median < 0.01).
updated vignettes. Only doing a burnin -- no log files are written to file
exonmap
fixed exon.details: bug in warning message when no details found for a given ID
VanillaICE
updated a few of the man pages
Rgraphviz
fixed a little bug that caused layoutGraph to crash for certain combinations of node shapes