About
Click here
to learn more about this blog.
Packages
Click on a link
for updates to that package only.
Subscribe
Subscribe to the
Bioconductor Changlog.
Fri, 04 Apr 2008
GGtools
added new vignette
GEOmetadb
Added lines at the end:
Finally, it is probably a good idea to close the connection, please see \Rpackage{DBI} for detail.
<<>>=
dbDisconnect(con)
@
If you want to remove old GEOmetadb.sqlite file before retrieve a new version from the server, execute the following codes:
<<>>=
file.remove('GEOmetadb.sqlite')
@
\end{document}
Fixed geoConvert.R argument case conversion problem.
flowCore
exporting constructor for quadGates in NAMESPACE
exporting quadGate class in the NAMESPACE now
added quadGate class and all necessary methods
altcdfenvs
Use matchPDict in Biostrings
Biostrings
matchPDict() now supports IUPAC ambiguities in the subject i.e. it will
treat them as wildcards when called with 'fixed=FALSE' on a Trusted Band
dict or with 'fixed=c(pattern=TRUE, subject=FALSE)' on any dict.
The implementation of this new feature uses a "split and merge pointers"
technique while walking the Aho-Corasick tree. Some testing, benchmarks,
code optimization and cleaning are still required. In particular it
needs to be tested on a genome with injected SNPs.
Version bump -> 2.7.44
GenomeGraphs
Slight change for clearer documentation on arguments of gdPlot
Bumped version number to 0.99.1 so the package can be included in the upcoming Bioc release
This adds package GenomeGraphs to bioconductor.
[/GenomeGraphs] permanent link
yaqcaffy
fixed bug in .plotdata function
xps
update to version xps-0.99.7
- try to remove warning for Mac build
preprocessCore
(1.1.9) Commit missing c source files. This should allow preprocessCore to successfully build and also pass R CMD check (which it has not done since 1.1.6)
[/preprocessCore] permanent link