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Bioconductor Changlog.
Wed, 02 Apr 2008
AnnotationDbi
Fixed rare bug that can happen when an ID is a very long integer
Fixed a rare bug that can happen where a very long integer is the ID.
When this happens R can promote this to a double before passing it to
SQLite which will then add an unwanted .0 extension onto the end of
it. Now Sqlforge will check for such IDs and cast them (but only if
needed).
[/AnnotationDbi] permanent link
GGtools
various
flowViz
changed default for name argument
affyPLM
(1.15.10) affyPLM now requires preprocessCore (>=1.1.7)
(1.15.9) rma background correction code from preprocessCore is now used
source files rma_background2.c and rma_background2.h have been removed
flowCore
fixed warnings for missing documenation during R CMD check
BiostringsCinterfaceDemo
trying to please 'R CMD check'
[/BiostringsCinterfaceDemo] permanent link
Biostrings
Renamed 'data' slot (XString class) -> 'xdata'. Version bumped to 2.7.43
flowQ
updated documentation and added a Vignette on how to create your own QA processes
affy
(1.17.12) bg.correct.rma now calls the appropriate code from preprocessCore.
Removed the c source code files (rma_background2.c, rma_background2.h).
Removed bg.correct.rma2()
(1.17.10) rma() now uses rma background correction routines from preprocessCore, rather than the previously used internal affy hybrid R/c code implementation
BSgenome
Updated the dependencies. Version bumped -> 1.7.7
xps
update to version xps-0.99.6
- added ifstream::ios::binary to allow reading of xda, calvin files on WinXP
Category
fixed up the KEGG part so it now works with the org.XX.eg.db packages
xcms
Add some symbols to the namespace.